RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 COPB2P35606 906 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 MMP14P50281 582 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 TCEAL1Q15170 157 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 B4GALNT3Q6L9W6 998 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 OGFOD3Q6PK18 319 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 FAM181AQ8N9Y4 354 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 ZSCAN18Q8TBC5 510 aaPredicted RBP3.85□□□□□ -1.79
VIM-210ENST00000637053 NXPE3Q969Y0 559 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 SCYL1Q96KG9 808 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 PRIMPOLQ96LW4 560 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 TSPAN18Q96SJ8 248 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 YIPF2Q9BWQ6 316 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 TANGO6Q9C0B7 1094 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 ACSS3Q9H6R3 686 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 FAM105AQ9NUU6 356 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 SWAP70Q9UH65 585 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 RAPGEFL1Q9UHV5 662 aa3.85□□□□□ -1.79
VIM-210ENST00000637053 FNDC3AQ9Y2H6 1198 aaKnown RBP3.85□□□□□ -1.79
VIM-210ENST00000637053 CCDC189A1A4V9 331 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 CTSBP07858 339 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 POLD1P28340 1107 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 TBX4P57082 545 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 XPCQ01831 940 aaPredicted RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 BIRC2Q13490 618 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 MAP7Q14244 749 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 AXDND1Q5T1B0 1012 aaPredicted RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 ZKSCAN2Q63HK3 967 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 C16orf46Q6P387 395 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 C1orf127Q8N9H9 656 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 TMEM102Q8N9M5 508 aaPredicted RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 ZCRB1Q8TBF4 217 aaKnown RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 PI4K2BQ8TCG2 481 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 DHX38Q92620 1227 aaKnown RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 MISP3Q96FF7 219 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 LIN37Q96GY3 246 aaPredicted RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 RPS6KC1Q96S38 1066 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 IRF2BPLQ9H1B7 796 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 TMX4Q9H1E5 349 aaPredicted RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 PIF1Q9H611 641 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 TPX2Q9ULW0 747 aaKnown RBP3.84□□□□□ -1.79
VIM-210ENST00000637053 SH3BP1Q9Y3L3 701 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 NUB1Q9Y5A7 615 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 COL4A3BPQ9Y5P4 624 aa3.84□□□□□ -1.79
VIM-210ENST00000637053 GOLIM4O00461 696 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 C1QTNF9P0C862 333 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 ESRRAP11474 423 aaPredicted RBP3.83□□□□□ -1.8
VIM-210ENST00000637053 EVA1CP58658 441 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 OCLNQ16625 522 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 TSNAXIP1Q2TAA8 658 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 ARMCX6Q7L4S7 300 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 GET4Q7L5D6 327 aaPredicted RBP3.83□□□□□ -1.8
VIM-210ENST00000637053 ZSWIM9Q86XI8 627 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 FLAD1Q8NFF5 587 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 BSNDQ8WZ55 320 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 C20orf173Q96LM9 149 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 SOX17Q9H6I2 414 aaPredicted RBP3.83□□□□□ -1.8
VIM-210ENST00000637053 LGR6Q9HBX8 967 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 PRDM7Q9NQW5 492 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 FAM13BQ9NYF5 915 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 NRBP1Q9UHY1 535 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 G3BP2Q9UN86 482 aaKnown RBP3.83□□□□□ -1.8
VIM-210ENST00000637053 FRMD4BQ9Y2L6 1034 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 RPGRIP1LQ68CZ1 1315 aa3.83□□□□□ -1.8
VIM-210ENST00000637053 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 ANKRD33BA6NCL7 494 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 DHX16O60231 1041 aaKnown RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 ATG7O95352 703 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 INHBBP09529 407 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 CES1P23141 567 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 GSTM4Q03013 218 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 PRKCQQ04759 706 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 LMOD3Q0VAK6 560 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 RNF187Q5TA31 235 aaPredicted RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 FYB2Q5VWT5 728 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 PDE12Q6L8Q7 609 aaKnown RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 SYDE1Q6ZW31 735 aaPredicted RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 DYMQ7RTS9 669 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 PCGF5Q86SE9 256 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 ANKLE2Q86XL3 938 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 CREBRFQ8IUR6 639 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 NETO1Q8TDF5 533 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 ZKSCAN3Q9BRR0 538 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 PPP1R12CQ9BZL4 782 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 CHRDQ9H2X0 955 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 GSX1Q9H4S2 264 aaPredicted RBP3.82□□□□□ -1.8
VIM-210ENST00000637053 SPC25Q9HBM1 224 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 PCDH12Q9NPG4 1184 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 FAM53CQ9NYF3 392 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 VAV3Q9UKW4 847 aa3.82□□□□□ -1.8
VIM-210ENST00000637053 GOLGA6CA6NDK9 693 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 GOLGA6BA6NDN3 693 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 PRC1O43663 620 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 S100BP04271 92 aaPredicted RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 HSP90AA1P07900 732 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 GOLGA6DP0CG33 693 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 HDLBPQ00341 1268 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 POU5F1Q01860 360 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 TAGLNQ01995 201 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 CNGB1Q14028 1251 aaPredicted RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 BMS1Q14692 1282 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms