RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 BTBD18B2RXH4 712 aa22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 POLR2DO15514 142 aaKnown RBP22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 FMNL1O95466 1100 aaPredicted RBP22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 SSRP1Q08945 709 aaKnown RBP22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 NR1I3Q14994 352 aa22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 TMEM67Q5HYA8 995 aa22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 TXLNBQ8N3L3 684 aa22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 PLA2G12BQ9BX93 195 aa22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 SAMSN1Q9NSI8 373 aaKnown RBP22.39■■□□□ 1.17
PDLIM3-212ENST00000620787 IFIT5Q13325 482 aaKnown RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 MTF1Q14872 753 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 UBE3CQ15386 1083 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 NUTM2AQ8IVF1 878 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 GRAMD1CQ8IYS0 662 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 CCDC12Q8WUD4 166 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 DDX17Q92841 729 aaKnown RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 INCENPQ9NQS7 918 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 RIPOR2Q9Y4F9 1068 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 MMP1P03956 469 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 CAPN2P17655 700 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 GTF2E1P29083 439 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 FAM89AQ96GI7 184 aa22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 TEX13AQ9BXU3 409 aaPredicted RBP22.38■■□□□ 1.17
PDLIM3-212ENST00000620787 ZNF532Q9HCE3 1301 aa22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 A0A1B0GTH6 734 aa22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 PCCAP05165 728 aaPredicted RBP22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 GUCY1A2P33402 732 aa22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 METTL24Q5JXM2 366 aa22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 TRIML1Q8N9V2 468 aa22.37■■□□□ 1.17
PDLIM3-212ENST00000620787 TXLNAP40222 546 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 LIFRP42702 1097 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 TTF1Q15361 905 aaPredicted RBP22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 ZNF512BQ96KM6 892 aaPredicted RBP22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 SEC31BQ9NQW1 1179 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 NID2Q14112 1375 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 ACTN4O43707 911 aaKnown RBP22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 IFNAR1P17181 557 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 PLCD1P51178 756 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 DIS3L2Q8IYB7 885 aaKnown RBP22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 PANX2Q96RD6 677 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 IRX2Q9BZI1 471 aaPredicted RBP22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 TIAM2Q8IVF5 1701 aa22.36■■□□□ 1.17
PDLIM3-212ENST00000620787 SOWAHDA6NJG2 315 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 IDH1O75874 414 aaKnown RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 PDE6AP16499 860 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 TRIM28Q13263 835 aaKnown RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 JAKMIP3Q5VZ66 844 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 PROSER2Q86WR7 435 aaPredicted RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 KCNJ14Q9UNX9 436 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 SLC12A7Q9Y666 1083 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 TCRBV5S4A2TA0A5A2 114 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 ERVV-2B6SEH9 535 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 AKR1B15C9JRZ8 316 aaPredicted RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 CCDC175P0C221 793 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 LONRF2Q1L5Z9 754 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 MUM1L1Q5H9M0 696 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 APTXQ7Z2E3 356 aaKnown RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 SPATA20Q8TB22 786 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 BBXQ8WY36 941 aaPredicted RBP22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 WASF1Q92558 559 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 WWC3Q9ULE0 1092 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 TACC3Q9Y6A5 838 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 TNS2Q63HR2 1409 aa22.35■■□□□ 1.17
PDLIM3-212ENST00000620787 MYH3P11055 1940 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 CCDC151A5D8V7 595 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 ALX1Q15699 326 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 ZNF579Q8NAF0 562 aaKnown RBP22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 STRBPQ96SI9 672 aaKnown RBP22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 ZSWIM5Q9P217 1185 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 PCDH11XQ9BZA7 1347 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 PCDH11YQ9BZA8 1340 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 SAFBQ15424 915 aaKnown RBP eCLIP22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 RILPL1Q5EBL4 403 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 RAD9BQ6WBX8 426 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 PCDHB6Q9Y5E3 794 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 ADGRG1Q9Y653 693 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 MYH6P13533 1939 aa22.34■■□□□ 1.17
PDLIM3-212ENST00000620787 MAP2K7O14733 419 aa22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 IFIT3O14879 490 aaKnown RBP22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 TEX33O43247 280 aa22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 ERCC5P28715 1186 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 BRD3Q15059 726 aa22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 ZBTB38Q8NAP3 1195 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 FOXP1Q9H334 677 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 EPB41L4AQ9HCS5 686 aaPredicted RBP22.33■■□□□ 1.17
PDLIM3-212ENST00000620787 H3BQF6 201 aa22.33■■□□□ 1.16
PDLIM3-212ENST00000620787 SRGAP1Q7Z6B7 1085 aa22.33■■□□□ 1.16
PDLIM3-212ENST00000620787 VGLL2Q8N8G2 317 aa22.33■■□□□ 1.16
PDLIM3-212ENST00000620787 SRPRBQ9Y5M8 271 aaKnown RBP22.33■■□□□ 1.16
PDLIM3-212ENST00000620787 A0A0U1RQJ8 604 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 CHMP4BP1P59074 171 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 CTDSPL2Q05D32 466 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 RAD51AP2Q09MP3 1159 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 GPS2Q13227 327 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 LDHAL6AQ6ZMR3 332 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 USP49Q70CQ1 688 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 SYNE4Q8N205 404 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 ATRIPQ8WXE1 791 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 LZTFL1Q9NQ48 299 aa22.32■■□□□ 1.16
PDLIM3-212ENST00000620787 DOCK2Q92608 1830 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms