RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SH2B2O14492 632 aaPredicted RBP16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 ARID4AP29374 1257 aaPredicted RBP16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 PPARAQ07869 468 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 VPS54Q9P1Q0 977 aa16.65■□□□□ 0.26
SHROOM1-208ENST00000617339 ZFP91Q96JP5 570 aaPredicted RBP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 MCM9Q9NXL9 1143 aa16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 V9GY48 417 aaPredicted RBP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 HIBADHP31937 336 aaKnown RBP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 SF3B2Q13435 895 aaKnown RBP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 RTN1Q16799 776 aa16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 IPO4Q8TEX9 1081 aaKnown RBP16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 STAMQ92783 540 aa16.64■□□□□ 0.25
SHROOM1-208ENST00000617339 FAM205CA6NFA0 338 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 USP5P45974 858 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 OLFM4Q6UX06 510 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 IGDCC4Q8TDY8 1250 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 MRPS27Q92552 414 aaKnown RBP16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 DYNLL2Q96FJ2 89 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 LY9Q9HBG7 655 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 CABP5Q9NP86 173 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 SMC2O95347 1197 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 RBM6P78332 1123 aaKnown RBP16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 ERCC6LQ2NKX8 1250 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 RASSF8Q8NHQ8 419 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 OXER1Q8TDS5 423 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 CPVLQ9H3G5 476 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 USP17L8P0C7I0 530 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 ALDH8A1Q9H2A2 487 aaPredicted RBP16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 RCOR1Q9UKL0 485 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 TUBGCP6Q96RT7 1819 aa16.63■□□□□ 0.25
SHROOM1-208ENST00000617339 ABCC12Q96J65 1359 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 ANO1Q5XXA6 986 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 TRIM22Q8IYM9 498 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 WDHD1O75717 1129 aaPredicted RBP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 KIF23Q02241 960 aaPredicted RBP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 MECOMQ03112 1051 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 TNKSO95271 1327 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 COBLO75128 1261 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 LMOD1P29536 600 aaPredicted RBP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 SAFBQ15424 915 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 DIS3L2Q8IYB7 885 aaKnown RBP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 GRAMD1CQ8IYS0 662 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 VAT1LQ9HCJ6 419 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 CALCOCO1Q9P1Z2 691 aa16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 TRPC5Q9UL62 973 aaPredicted RBP16.62■□□□□ 0.25
SHROOM1-208ENST00000617339 PLA2G4DQ86XP0 818 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 LRRC8AQ8IWT6 810 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 ZSCAN29Q8IWY8 852 aaPredicted RBP16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 AMOTL1Q8IY63 956 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 LINC00301Q8NCQ3 95 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 SLC44A5Q8NCS7 719 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 LRRN4CLQ8ND94 238 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 UIMC1Q96RL1 719 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 STX8Q9UNK0 236 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 TSPY2A6NKD2 308 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 CAPN2P17655 700 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 GRIN1Q05586 938 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 GRIK5Q16478 980 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 ZNF827Q17R98 1081 aa16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 IFIT1BQ5T764 474 aaKnown RBP16.61■□□□□ 0.25
SHROOM1-208ENST00000617339 SYCP1Q15431 976 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 NEK11Q8NG66 645 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 THRAP3Q9Y2W1 955 aaKnown RBP16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 FOXN1O15353 648 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 ZNF202O95125 648 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 PLEKHA8P1O95397 391 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 HNRNPH2P55795 449 aaKnown RBP16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 FAM160A1Q05DH4 1040 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 PNOCQ13519 176 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 DPCR1Q3MIW9 517 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 ZNF654Q8IZM8 581 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 CERKQ8TCT0 537 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 SLC3A2P08195 630 aaKnown RBP16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 NOM1Q5C9Z4 860 aaKnown RBP16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 MAPKAPK5Q8IW41 473 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 GJD4Q96KN9 370 aaPredicted RBP16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 JCADQ9P266 1359 aa16.6■□□□□ 0.25
SHROOM1-208ENST00000617339 CASP1P29466 404 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 PAXIP1Q6ZW49 1069 aaPredicted RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 AGXT2Q9BYV1 514 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 PKD1L3Q7Z443 1732 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 ELP1O95163 1332 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 SLU7O95391 586 aaKnown RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 VEGFAP15692 232 aaPredicted RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 TNNT3P45378 269 aaPredicted RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 KRT23Q9C075 422 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 ZNF446Q9NWS9 450 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 ZMYM6O95789 1325 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 CDKL5O76039 1030 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 PFKFB1P16118 471 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 SYKP43405 635 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 EIF6P56537 245 aaKnown RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 SNW1Q13573 536 aaKnown RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 RASGRP2Q7LDG7 609 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 TGFBRAP1Q8WUH2 860 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 ESR2Q92731 530 aa16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 BSDC1Q9NW68 430 aaPredicted RBP16.59■□□□□ 0.25
SHROOM1-208ENST00000617339 GOLGA8HP0CJ92 632 aa16.58■□□□□ 0.25
SHROOM1-208ENST00000617339 AFMP43652 599 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms