RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 TUBE1Q9UJT0 475 aa16.1■□□□□ 0.17
COL6A1-207ENST00000612273 CPDO75976 1380 aa16.1■□□□□ 0.17
COL6A1-207ENST00000612273 LAMA4Q16363 1823 aa16.1■□□□□ 0.17
COL6A1-207ENST00000612273 KIF2AO00139 706 aaPredicted RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 PES1O00541 588 aaKnown RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 TTF1Q15361 905 aaPredicted RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 SMIM5Q71RC9 77 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 SLC4A9Q96Q91 983 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 CSRNP2Q9H175 543 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 RAI14Q9P0K7 980 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 GOLGB1Q14789 3259 aaKnown RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 PSDA5PKW4 1024 aaPredicted RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 IKBKBO14920 756 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 CDC25AP30304 524 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 GYS2P54840 703 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 AKAP17AQ02040 695 aaKnown RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 TERF2Q15554 542 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 AKNAD1Q5T1N1 836 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 ACSBG1Q96GR2 724 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 PUF60Q9UHX1 559 aaKnown RBP16.09■□□□□ 0.17
COL6A1-207ENST00000612273 CUTAO60888 179 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 ZNF174Q15697 407 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 TMCO3Q6UWJ1 677 aa16.09■□□□□ 0.17
COL6A1-207ENST00000612273 SOWAHDA6NJG2 315 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 GSG1L2A8MUP6 293 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 PATL2C9JE40 543 aaKnown RBP16.08■□□□□ 0.17
COL6A1-207ENST00000612273 PPP6R2O75170 966 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 EVX2Q03828 476 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 TRIM65Q6PJ69 517 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 REXO1L1PQ8IX06 675 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 TMEM87BQ96K49 555 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 BPIFA3Q9BQP9 254 aa16.08■□□□□ 0.17
COL6A1-207ENST00000612273 CYP7A1P22680 504 aa16.08■□□□□ 0.16
COL6A1-207ENST00000612273 CASQ1P31415 396 aa16.08■□□□□ 0.16
COL6A1-207ENST00000612273 CCT6AP40227 531 aaKnown RBP16.08■□□□□ 0.16
COL6A1-207ENST00000612273 UBE3CQ15386 1083 aa16.08■□□□□ 0.16
COL6A1-207ENST00000612273 EARS2Q5JPH6 523 aaKnown RBP16.08■□□□□ 0.16
COL6A1-207ENST00000612273 CCDC12Q8WUD4 166 aaPredicted RBP16.08■□□□□ 0.16
COL6A1-207ENST00000612273 BLZF1Q9H2G9 400 aa16.08■□□□□ 0.16
COL6A1-207ENST00000612273 BTG4Q9NY30 223 aa16.08■□□□□ 0.16
COL6A1-207ENST00000612273 SART3Q15020 963 aaKnown RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 ZFP91Q96JP5 570 aaPredicted RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 V9GY48 417 aaPredicted RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 ARFGEF2Q9Y6D5 1785 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 MST1RQ04912 1400 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 VWA3AA6NCI4 1184 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 KIF20AO95235 890 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 PUM3Q15397 648 aaKnown RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 BICDL1Q6ZP65 573 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 CCDC24Q8N4L8 307 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 L2HGDHQ9H9P8 463 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 RIC1Q4ADV7 1423 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 WNT7AO00755 349 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 MMP1P03956 469 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 KCNQ4P56696 695 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 NOL10Q9BSC4 688 aaKnown RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 RNF216Q9NWF9 866 aaPredicted RBP16.07■□□□□ 0.16
COL6A1-207ENST00000612273 SCN11AQ9UI33 1791 aa16.07■□□□□ 0.16
COL6A1-207ENST00000612273 PNMA6AP0CW24 399 aaPredicted RBP16.06■□□□□ 0.16
COL6A1-207ENST00000612273 GYG1P46976 350 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 LPIN2Q92539 896 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 TNS3Q68CZ2 1445 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 SIPA1L3O60292 1781 aaPredicted RBP16.06■□□□□ 0.16
COL6A1-207ENST00000612273 SLC5A1P13866 664 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 BMS1Q14692 1282 aaKnown RBP16.06■□□□□ 0.16
COL6A1-207ENST00000612273 FBXL16Q8N461 479 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 MED15Q96RN5 788 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 TCRBV5S4A2TA0A5A2 114 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 PDE8AO60658 829 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 ZNF654Q8IZM8 581 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 VGLL2Q8N8G2 317 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 NACAP1Q9BZK3 213 aa16.06■□□□□ 0.16
COL6A1-207ENST00000612273 A0A087X0B3 334 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 FMNL1O95466 1100 aaPredicted RBP16.05■□□□□ 0.16
COL6A1-207ENST00000612273 SPECC1LQ69YQ0 1117 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 ADGRA1Q86SQ6 560 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 GPIHBP1Q8IV16 184 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 FANCBQ8NB91 859 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 TIGD1Q96MW7 591 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 HOOK1Q9UJC3 728 aaKnown RBP16.05■□□□□ 0.16
COL6A1-207ENST00000612273 FBXO2Q9UK22 296 aaPredicted RBP16.05■□□□□ 0.16
COL6A1-207ENST00000612273 PARP3Q9Y6F1 533 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 USP54Q70EL1 1684 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 ZSCAN12O43309 604 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 PLEKHA8P1O95397 391 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 DYNLL1P63167 89 aaKnown RBP16.05■□□□□ 0.16
COL6A1-207ENST00000612273 CCDC93Q567U6 631 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 SUSD4Q5VX71 490 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 TC2NQ8N9U0 490 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 PLIN2Q99541 437 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 MRPL44Q9H9J2 332 aaKnown RBP16.05■□□□□ 0.16
COL6A1-207ENST00000612273 FHOD1Q9Y613 1164 aa16.05■□□□□ 0.16
COL6A1-207ENST00000612273 NMT2O60551 498 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 ARHGAP6O43182 974 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 UQCRFS1P1P0C7P4 283 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 IFNAR1P17181 557 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 CRACR2BQ8N4Y2 399 aaPredicted RBP16.04■□□□□ 0.16
COL6A1-207ENST00000612273 CARD10Q9BWT7 1032 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 ARGLU1Q9NWB6 273 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms