RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	MDM2	Q00987	491 aa	Predicted RBP	13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	APOA5	Q6Q788	366 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	ACRBP	Q8NEB7	543 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	PLBD2	Q8NHP8	589 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	APPBP2	Q92624	585 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	EFCC1	Q9HA90	598 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	KCNJ14	Q9UNX9	436 aa		13.6	□□□□□ -0.23
TPM3-223	ENST00000611659	CTAGE15	A4D2H0	777 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CTAGE8	P0CG41	777 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CTAGE6	Q86UF2	777 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CTAGE4	Q8IX94	777 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	XAGE2	Q96GT9	111 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	MED15	Q96RN5	788 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	ZBTB3	Q9H5J0	574 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	GPR108	Q9NPR9	543 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CWC25	Q9NXE8	425 aa	Predicted RBP	13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	COBL	O75128	1261 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	ABL1	P00519	1130 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	AFM	P43652	599 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	TBC1D10C	Q8IV04	446 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	INCENP	Q9NQS7	918 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	NFAT5	O94916	1531 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	FAM237A	A0A1B0GTK4	181 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	RANBP6	O60518	1105 aa	Known RBP	13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	ZFY	P08048	801 aa	Predicted RBP	13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CASP14	P31944	242 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CABLES1	Q8TDN4	633 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	PANX2	Q96RD6	677 aa		13.59	□□□□□ -0.23
TPM3-223	ENST00000611659	CASP1	P29466	404 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	AKAP17A	Q02040	695 aa	Known RBP	13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	MORC3	Q14149	939 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	SAFB	Q15424	915 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	TTLL7	Q6ZT98	887 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	USP49	Q70CQ1	688 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	NOSTRIN	Q8IVI9	506 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	SEC31B	Q9NQW1	1179 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	AKAP2	Q9Y2D5	859 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	UBN2	Q6ZU65	1347 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	OVOS2	A0A0G2JMS6	1433 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659		H7C1W4	665 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	NOP2	P46087	812 aa	Known RBP	13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	MSANTD4	Q8NCY6	345 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	FAM204A	Q9H8W3	233 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	RAB21	Q9UL25	225 aa		13.58	□□□□□ -0.24
TPM3-223	ENST00000611659	CPD	O75976	1380 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659		A0A1B0GTH6	734 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	EIF3CL	B5ME19	914 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	SH2B2	O14492	632 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	CCT6A	P40227	531 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	USP5	P45974	858 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	PLCD1	P51178	756 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	GTF2A1	P52655	376 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	IRX3	P78415	501 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	SSRP1	Q08945	709 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	CCDC57	Q2TAC2	916 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	TTC31	Q49AM3	519 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	TAF7L	Q5H9L4	462 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	TMEM67	Q5HYA8	995 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	NCAPH2	Q6IBW4	605 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	DIS3L2	Q8IYB7	885 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	IQUB	Q8NA54	791 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	NOA1	Q8NC60	698 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	EIF3C	Q99613	913 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	CSB-PGBD3	P0DP91	1061 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	PHKG2	P15735	406 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	ANKLE2	Q86XL3	938 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	CMTR1	Q8N1G2	835 aa	Known RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	NAPG	Q99747	312 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	NBPF3	Q9H094	633 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	PLEKHG2	Q9H7P9	1386 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	GUCY1A2	P33402	732 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	CHRNA2	Q15822	529 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	GDAP1L1	Q96MZ0	367 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	PCDHB6	Q9Y5E3	794 aa		13.57	□□□□□ -0.24
TPM3-223	ENST00000611659	IDH1	O75874	414 aa	Known RBP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	TOB1	P50616	345 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	FILIP1L	Q4L180	1135 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	FAM71B	Q8TC56	605 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	GBP3	Q9H0R5	595 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	TOMM22	Q9NS69	142 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	SLC12A7	Q9Y666	1083 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	MFAP3L	O75121	409 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	TAT	P17735	454 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	FXR1	P51114	621 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	NR5A1	Q13285	461 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	NAA15	Q9BXJ9	866 aa	Known RBP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	ACBD3	Q9H3P7	528 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	FBXO2	Q9UK22	296 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	SYNRG	Q9UMZ2	1314 aa		13.56	□□□□□ -0.24
TPM3-223	ENST00000611659	SARS	P49591	514 aa	Known RBP	13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	PIP4K2B	P78356	416 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	LRRC31	Q6UY01	552 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	RASGRP2	Q7LDG7	609 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	PACS2	Q86VP3	889 aa		13.55	□□□□□ -0.24
TPM3-223	ENST00000611659	KDM6A	O15550	1401 aa	Predicted RBP	13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms