RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 TMED8Q6PL24 325 aaPredicted RBP31.71■■■□□ 2.67
PNKP-216ENST00000601816 CERS3Q8IU89 383 aa31.71■■■□□ 2.67
PNKP-216ENST00000601816 PTPN22Q9Y2R2 807 aa31.71■■■□□ 2.67
PNKP-216ENST00000601816 A0A0G2JLL6 359 aaPredicted RBP31.7■■■□□ 2.67
PNKP-216ENST00000601816 CAP1Q01518 475 aa31.7■■■□□ 2.67
PNKP-216ENST00000601816 TTF1Q15361 905 aaPredicted RBP31.7■■■□□ 2.67
PNKP-216ENST00000601816 FASTKD5Q7L8L6 764 aaKnown RBP31.7■■■□□ 2.67
PNKP-216ENST00000601816 PRRT2Q7Z6L0 340 aaPredicted RBP31.7■■■□□ 2.67
PNKP-216ENST00000601816 PPIL4Q8WUA2 492 aaKnown RBP eCLIP31.7■■■□□ 2.67
PNKP-216ENST00000601816 MIGA1Q8NAN2 632 aa31.69■■■□□ 2.66
PNKP-216ENST00000601816 FRMD4AQ9P2Q2 1039 aaPredicted RBP31.69■■■□□ 2.66
PNKP-216ENST00000601816 KIF22Q14807 665 aa31.68■■■□□ 2.66
PNKP-216ENST00000601816 GPAT2Q6NUI2 795 aa31.68■■■□□ 2.66
PNKP-216ENST00000601816 CCDC84Q86UT8 332 aaPredicted RBP31.68■■■□□ 2.66
PNKP-216ENST00000601816 PARK7Q99497 189 aaKnown RBP31.68■■■□□ 2.66
PNKP-216ENST00000601816 TRIM75PA6NK02 468 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 CAP2P40123 477 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 GADL1Q6ZQY3 521 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 DNAJC2Q99543 621 aaKnown RBP31.67■■■□□ 2.66
PNKP-216ENST00000601816 CPA4Q9UI42 421 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 FOCADQ5VW36 1801 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 CDK5RAP2Q96SN8 1893 aa31.67■■■□□ 2.66
PNKP-216ENST00000601816 LACTBP83111 547 aaPredicted RBP31.66■■■□□ 2.66
PNKP-216ENST00000601816 C17orf99Q6UX52 265 aa31.66■■■□□ 2.66
PNKP-216ENST00000601816 TRIM34Q9BYJ4 488 aa31.66■■■□□ 2.66
PNKP-216ENST00000601816 SAP30BPQ9UHR5 308 aaKnown RBP31.66■■■□□ 2.66
PNKP-216ENST00000601816 PALD1Q9ULE6 856 aa31.66■■■□□ 2.66
PNKP-216ENST00000601816 FOXP4Q8IVH2 680 aaPredicted RBP31.65■■■□□ 2.66
PNKP-216ENST00000601816 CRACR2BQ8N4Y2 399 aaPredicted RBP31.65■■■□□ 2.66
PNKP-216ENST00000601816 ADGRA2Q96PE1 1338 aa31.65■■■□□ 2.66
PNKP-216ENST00000601816 PHIPQ8WWQ0 1821 aa31.65■■■□□ 2.66
PNKP-216ENST00000601816 SIPA1L1O43166 1804 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 GOLIM4O00461 696 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 HLA-DOAP06340 250 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 USP5P45974 858 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 RRP1BQ14684 758 aaKnown RBP31.64■■■□□ 2.66
PNKP-216ENST00000601816 TBC1D2Q9BYX2 928 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 LRRCC1Q9C099 1032 aa31.64■■■□□ 2.66
PNKP-216ENST00000601816 ARHGAP39Q9C0H5 1083 aa31.63■■■□□ 2.65
PNKP-216ENST00000601816 CYP2C8P10632 490 aa31.62■■■□□ 2.65
PNKP-216ENST00000601816 PDE6AP16499 860 aa31.62■■■□□ 2.65
PNKP-216ENST00000601816 SLC9C2Q5TAH2 1124 aa31.62■■■□□ 2.65
PNKP-216ENST00000601816 METTL16Q86W50 562 aaKnown RBP31.62■■■□□ 2.65
PNKP-216ENST00000601816 ZNF280CQ8ND82 737 aa31.62■■■□□ 2.65
PNKP-216ENST00000601816 SLC45A1Q9Y2W3 748 aa31.62■■■□□ 2.65
PNKP-216ENST00000601816 PTPRFP10586 1907 aa31.61■■■□□ 2.65
PNKP-216ENST00000601816 USP17L5A8MUK1 530 aa31.61■■■□□ 2.65
PNKP-216ENST00000601816 SPP2Q13103 211 aa31.61■■■□□ 2.65
PNKP-216ENST00000601816 DNAJC18Q9H819 358 aa31.61■■■□□ 2.65
PNKP-216ENST00000601816 ATAD5Q96QE3 1844 aa31.61■■■□□ 2.65
PNKP-216ENST00000601816 ATP5JP18859 108 aa31.6■■■□□ 2.65
PNKP-216ENST00000601816 SLC4A8Q2Y0W8 1093 aa31.6■■■□□ 2.65
PNKP-216ENST00000601816 RIOK1Q9BRS2 568 aaKnown RBP31.6■■■□□ 2.65
PNKP-216ENST00000601816 BOLA2Q9H3K6 86 aa31.6■■■□□ 2.65
PNKP-216ENST00000601816 AS3MTQ9HBK9 375 aa31.6■■■□□ 2.65
PNKP-216ENST00000601816 AGTPBP1Q9UPW5 1226 aa31.6■■■□□ 2.65
PNKP-216ENST00000601816 HTTP42858 3142 aa31.59■■■□□ 2.65
PNKP-216ENST00000601816 MAGEB6P1A0A0J9YX57 407 aa31.59■■■□□ 2.65
PNKP-216ENST00000601816 GNRH1P01148 92 aa31.59■■■□□ 2.65
PNKP-216ENST00000601816 EDC3Q96F86 508 aaKnown RBP31.59■■■□□ 2.65
PNKP-216ENST00000601816 PAG1Q9NWQ8 432 aa31.59■■■□□ 2.65
PNKP-216ENST00000601816 PTCH2Q9Y6C5 1203 aa31.59■■■□□ 2.65
PNKP-216ENST00000601816 ZNF532Q9HCE3 1301 aa31.58■■■□□ 2.65
PNKP-216ENST00000601816 ASNSP08243 561 aa31.58■■■□□ 2.65
PNKP-216ENST00000601816 ARMC5Q96C12 935 aa31.58■■■□□ 2.65
PNKP-216ENST00000601816 ZSWIM8A7E2V4 1837 aa31.58■■■□□ 2.65
PNKP-216ENST00000601816 SMARCA5O60264 1052 aaPredicted RBP31.57■■■□□ 2.64
PNKP-216ENST00000601816 ECM2O94769 699 aaPredicted RBP31.57■■■□□ 2.64
PNKP-216ENST00000601816 BCRP11274 1271 aa31.57■■■□□ 2.64
PNKP-216ENST00000601816 PROCA1Q8NCQ7 364 aaPredicted RBP31.57■■■□□ 2.64
PNKP-216ENST00000601816 PSMC4P43686 418 aa31.56■■■□□ 2.64
PNKP-216ENST00000601816 PRMT2P55345 433 aa31.56■■■□□ 2.64
PNKP-216ENST00000601816 HAUS7Q99871 368 aa31.56■■■□□ 2.64
PNKP-216ENST00000601816 GINM1Q9NU53 330 aa31.56■■■□□ 2.64
PNKP-216ENST00000601816 RRP1P56182 461 aaKnown RBP31.55■■■□□ 2.64
PNKP-216ENST00000601816 SLC9C1Q4G0N8 1177 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 TREML2Q5T2D2 321 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 TTC6Q86TZ1 520 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 SMCR8Q8TEV9 937 aaPredicted RBP31.55■■■□□ 2.64
PNKP-216ENST00000601816 WDR18Q9BV38 432 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 CRNKL1Q9BZJ0 848 aaKnown RBP31.55■■■□□ 2.64
PNKP-216ENST00000601816 DCTPP1Q9H773 170 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 MYH1P12882 1939 aa31.55■■■□□ 2.64
PNKP-216ENST00000601816 TCRBV5S4A2TA0A5A2 114 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 GDF11O95390 407 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 FMNL1O95466 1100 aaPredicted RBP31.54■■■□□ 2.64
PNKP-216ENST00000601816 CTGFP29279 349 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 HMGCS2P54868 508 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 JAG1P78504 1218 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 TRIM47Q96LD4 638 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 EHD4Q9H223 541 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 SERPINB13Q9UIV8 391 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 PNMA3Q9UL41 463 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 ZBTB21Q9ULJ3 1066 aa31.54■■■□□ 2.64
PNKP-216ENST00000601816 HOXD10P28358 340 aa31.53■■■□□ 2.64
PNKP-216ENST00000601816 NBPF11Q86T75 865 aa31.53■■■□□ 2.64
PNKP-216ENST00000601816 YTHDC1Q96MU7 727 aaKnown RBP31.53■■■□□ 2.64
PNKP-216ENST00000601816 DDX24Q9GZR7 859 aaKnown RBP eCLIP31.53■■■□□ 2.641e-10■□□□□ 9.6
PNKP-216ENST00000601816 LOC285556D6RIA3 1793 aa31.53■■■□□ 2.64
PNKP-216ENST00000601816 PABPC4Q13310 644 aaKnown RBP eCLIP31.52■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms