RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 GNL3LQ9NVN8 582 aaKnown RBP12.41□□□□□ -0.42
HIF3A-219ENST00000600879 PNMA3Q9UL41 463 aa12.41□□□□□ -0.42
HIF3A-219ENST00000600879 RFX7Q2KHR2 1363 aa12.41□□□□□ -0.42
HIF3A-219ENST00000600879 PTPRFP10586 1907 aa12.41□□□□□ -0.42
HIF3A-219ENST00000600879 DOCK3Q8IZD9 2030 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 PHIPQ8WWQ0 1821 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 CAPN2P17655 700 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 ADORA1P30542 326 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 BTDP43251 543 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 RRP1BQ14684 758 aaKnown RBP12.4□□□□□ -0.42
HIF3A-219ENST00000600879 CCL14Q16627 93 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 CDX2Q99626 313 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-219ENST00000600879 USP44Q9H0E7 712 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 ASCC2Q9H1I8 757 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-219ENST00000600879 ABCF2Q9UG63 623 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 DENND2AQ9ULE3 1009 aa12.4□□□□□ -0.42
HIF3A-219ENST00000600879 SALL1Q9NSC2 1324 aa12.39□□□□□ -0.43
HIF3A-219ENST00000600879 COL6A1P12109 1028 aa12.39□□□□□ -0.43
HIF3A-219ENST00000600879 ATN1P54259 1190 aaPredicted RBP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 MAP3K10Q02779 954 aa12.39□□□□□ -0.43
HIF3A-219ENST00000600879 CACNB2Q08289 660 aaPredicted RBP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 MRPL50Q8N5N7 158 aaKnown RBP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 MAFAQ8NHW3 353 aaPredicted RBP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 MYLIPQ8WY64 445 aa12.39□□□□□ -0.43
HIF3A-219ENST00000600879 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.39□□□□□ -0.43
HIF3A-219ENST00000600879 TXNRD2Q9NNW7 524 aa12.39□□□□□ -0.43
HIF3A-219ENST00000600879 GAKO14976 1311 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 GCLCP48506 637 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-219ENST00000600879 MAP3K21Q5TCX8 1036 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 ZNF697Q5TEC3 545 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 PROCA1Q8NCQ7 364 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-219ENST00000600879 CEP126Q9P2H0 1117 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 NDUFB9Q9Y6M9 179 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 MYH2Q9UKX2 1941 aa12.38□□□□□ -0.43
HIF3A-219ENST00000600879 PLXNB2O15031 1838 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 PRUNE2Q8WUY3 3088 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 RASGRF1Q13972 1273 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 SHROOM1Q2M3G4 852 aaPredicted RBP12.37□□□□□ -0.43
HIF3A-219ENST00000600879 C9orf50Q5SZB4 431 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 CCDC102BQ68D86 513 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 LHX8Q68G74 356 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 ZNF280CQ8ND82 737 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 LBHD1Q9BQE6 289 aaPredicted RBP12.37□□□□□ -0.43
HIF3A-219ENST00000600879 SENP6Q9GZR1 1112 aaPredicted RBP12.37□□□□□ -0.43
HIF3A-219ENST00000600879 PA2G4Q9UQ80 394 aaKnown RBP12.37□□□□□ -0.43
HIF3A-219ENST00000600879 MROH7-TTC4A0A0A0MT08 1334 aa12.37□□□□□ -0.43
HIF3A-219ENST00000600879 COL2A1P02458 1487 aaPredicted RBP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 SEMA3EO15041 775 aa12.36□□□□□ -0.43
HIF3A-219ENST00000600879 ZKSCAN1P17029 563 aaPredicted RBP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 PABPC4Q13310 644 aaKnown RBP eCLIP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 SHHQ15465 462 aa12.36□□□□□ -0.43
HIF3A-219ENST00000600879 FAM109BQ6ICB4 259 aaPredicted RBP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 ZGPATQ8N5A5 531 aaKnown RBP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 P2RX7Q99572 595 aaKnown RBP12.36□□□□□ -0.43
HIF3A-219ENST00000600879 PORCNQ9H237 461 aa12.36□□□□□ -0.43
HIF3A-219ENST00000600879 LOC285556D6RIA3 1793 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 COL9A1P20849 921 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 RHBDL3P58872 404 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 TIMM10P62072 90 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 IRX3P78415 501 aaPredicted RBP12.35□□□□□ -0.43
HIF3A-219ENST00000600879 JAG1P78504 1218 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 MECOMQ03112 1051 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 MTMR2Q13614 643 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 Q3C1V9 767 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 SLF2Q8IX21 1173 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 NUDT12Q9BQG2 462 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 OSBPL5Q9H0X9 879 aaPredicted RBP12.35□□□□□ -0.43
HIF3A-219ENST00000600879 TTYH1Q9H313 450 aaPredicted RBP12.35□□□□□ -0.43
HIF3A-219ENST00000600879 SEMA6BQ9H3T3 888 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 PTPRCP08575 1304 aa12.35□□□□□ -0.43
HIF3A-219ENST00000600879 DNAH12Q6ZR08 3092 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 USP17L5A8MUK1 530 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 TBC1D12O60347 775 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 CIAO1O76071 339 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 CAP2P40123 477 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 POTEEQ6S8J3 1075 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 ERICH6Q7L0X2 663 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 FAM9BQ8IZU0 186 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 ZNF384Q8TF68 577 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 SSH1Q8WYL5 1049 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 PAGR1Q9BTK6 254 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 FLRT1Q9NZU1 646 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 MORF4L1Q9UBU8 362 aa12.34□□□□□ -0.43
HIF3A-219ENST00000600879 CDH23Q9H251 3354 aa12.33□□□□□ -0.43
HIF3A-219ENST00000600879 GPR75-ASB3A0A0A6YYF3 556 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 PDE3AQ14432 1141 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 SPTY2D1Q68D10 685 aaPredicted RBP12.33□□□□□ -0.44
HIF3A-219ENST00000600879 PI16Q6UXB8 463 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 TBC1D9Q6ZT07 1266 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 CCAR1Q8IX12 1150 aaKnown RBP12.33□□□□□ -0.44
HIF3A-219ENST00000600879 USP38Q8NB14 1042 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 GPRC5AQ8NFJ5 357 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 SOCS4Q8WXH5 440 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 FAM163AQ96GL9 167 aaPredicted RBP12.33□□□□□ -0.44
HIF3A-219ENST00000600879 AS3MTQ9HBK9 375 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 PRDM5Q9NQX1 630 aaPredicted RBP12.33□□□□□ -0.44
HIF3A-219ENST00000600879 TMOD4Q9NZQ9 345 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 RBPJLQ9UBG7 517 aa12.33□□□□□ -0.44
HIF3A-219ENST00000600879 ATP11BQ9Y2G3 1177 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms