RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 NEDD4P46934 1319 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 SHTN1A0MZ66 631 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 ORC4O43929 436 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 CPA1P15085 419 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 TNFAIP1Q13829 316 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 TBC1D10BQ4KMP7 808 aaPredicted RBP18.24■□□□□ 0.51
UPF1-206ENST00000598471 RRP12Q5JTH9 1297 aaKnown RBP18.24■□□□□ 0.51
UPF1-206ENST00000598471 ZSCAN29Q8IWY8 852 aaPredicted RBP18.24■□□□□ 0.51
UPF1-206ENST00000598471 STK11IPQ8N1F8 1099 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 TBC1D2Q9BYX2 928 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 ALDH8A1Q9H2A2 487 aaPredicted RBP18.24■□□□□ 0.51
UPF1-206ENST00000598471 FAM198AQ9UFP1 575 aa18.24■□□□□ 0.51
UPF1-206ENST00000598471 MYH1P12882 1939 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 B4E1Z4 1266 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 K7ELQ4 463 aaPredicted RBP18.23■□□□□ 0.51
UPF1-206ENST00000598471 PRC1O43663 620 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 FGRP09769 529 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 TCP10Q12799 353 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 SART3Q15020 963 aaKnown RBP18.23■□□□□ 0.51
UPF1-206ENST00000598471 SLC4A8Q2Y0W8 1093 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 NBPF9Q3BBW0 867 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 FAM83AQ86UY5 434 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 TRIM34Q9BYJ4 488 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 MKNK2Q9HBH9 465 aa18.23■□□□□ 0.51
UPF1-206ENST00000598471 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.23■□□□□ 0.51
UPF1-206ENST00000598471 TCP10L2B9ZVM9 353 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 KDM4AO75164 1064 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 PLCD1P51178 756 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 AK2P54819 239 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 EXOSC10Q01780 885 aaKnown RBP18.22■□□□□ 0.51
UPF1-206ENST00000598471 C16orf86Q6ZW13 317 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 SAMD7Q7Z3H4 446 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 FAM151AQ8WW52 585 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 MTA3Q9BTC8 594 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 EHD4Q9H223 541 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 ADARB2Q9NS39 739 aaKnown RBP18.22■□□□□ 0.51
UPF1-206ENST00000598471 SWAP70Q9UH65 585 aa18.22■□□□□ 0.51
UPF1-206ENST00000598471 ATRNL1Q5VV63 1379 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 KIF3CO14782 793 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 CD2BP2O95400 341 aaKnown RBP18.21■□□□□ 0.51
UPF1-206ENST00000598471 Q6ZUG5 572 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 CRACR2BQ8N4Y2 399 aaPredicted RBP18.21■□□□□ 0.51
UPF1-206ENST00000598471 L3MBTL3Q96JM7 780 aaPredicted RBP18.21■□□□□ 0.51
UPF1-206ENST00000598471 TMEM87BQ96K49 555 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 PI4KBQ9UBF8 816 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 SERPINB13Q9UIV8 391 aa18.21■□□□□ 0.51
UPF1-206ENST00000598471 ERICH2A1L162 156 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 RANBP6O60518 1105 aaKnown RBP18.2■□□□□ 0.5
UPF1-206ENST00000598471 EPS15P42566 896 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 NOL8Q76FK4 1167 aaKnown RBP18.2■□□□□ 0.5
UPF1-206ENST00000598471 IQCA1Q86XH1 822 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 APOBEC3FQ8IUX4 373 aaKnown RBP18.2■□□□□ 0.5
UPF1-206ENST00000598471 ZNF444Q8N0Y2 327 aaPredicted RBP18.2■□□□□ 0.5
UPF1-206ENST00000598471 DYNLL2Q96FJ2 89 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 ZSCAN31Q96LW9 406 aaPredicted RBP18.2■□□□□ 0.5
UPF1-206ENST00000598471 TCEANC2Q96MN5 208 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 UBAC1Q9BSL1 405 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 LIMCH1Q9UPQ0 1083 aa18.2■□□□□ 0.5
UPF1-206ENST00000598471 PRDM1O75626 825 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 EGFRP00533 1210 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 CDK8P49336 464 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 FOXP4Q8IVH2 680 aaPredicted RBP18.19■□□□□ 0.5
UPF1-206ENST00000598471 ZFPM1Q8IX07 1006 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 FBXL16Q8N461 479 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 TRPM4Q8TD43 1214 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 INCENPQ9NQS7 918 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 ZSWIM5Q9P217 1185 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 HACL1Q9UJ83 578 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 TACC3Q9Y6A5 838 aa18.19■□□□□ 0.5
UPF1-206ENST00000598471 IQCA1LA6NCM1 817 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 DDTLA6NHG4 134 aaPredicted RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 TSPY2A6NKD2 308 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 SMIM22K7EJ46 135 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 IFIT3O14879 490 aaKnown RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 HSP90AA1P07900 732 aaKnown RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 VEGFAP15692 232 aaPredicted RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 ANTXR2P58335 489 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 EVX2Q03828 476 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 GABPAQ06546 454 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 TOB2Q14106 344 aaPredicted RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 CCDC178Q5BJE1 867 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 TMEM67Q5HYA8 995 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 CYB5R4Q7L1T6 521 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 CHST3Q7LGC8 479 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 BRF1Q92994 677 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 CSRNP1Q96S65 589 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 LRRC2Q9BYS8 371 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 AGXT2Q9BYV1 514 aa18.18■□□□□ 0.5
UPF1-206ENST00000598471 SH2B1Q9NRF2 756 aaPredicted RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 ANGEL1Q9UNK9 670 aaKnown RBP18.18■□□□□ 0.5
UPF1-206ENST00000598471 CNTNAP1P78357 1384 aa18.17■□□□□ 0.5
UPF1-206ENST00000598471 TSPY3P0CV98 308 aa18.17■□□□□ 0.5
UPF1-206ENST00000598471 TSPY8P0CW00 308 aa18.17■□□□□ 0.5
UPF1-206ENST00000598471 COL9A3Q14050 684 aaPredicted RBP18.17■□□□□ 0.5
UPF1-206ENST00000598471 SH3BP5LQ7L8J4 393 aa18.17■□□□□ 0.5
UPF1-206ENST00000598471 TMX3Q96JJ7 454 aa18.17■□□□□ 0.5
UPF1-206ENST00000598471 HERC5Q9UII4 1024 aaKnown RBP18.17■□□□□ 0.5
UPF1-206ENST00000598471 SH2B2O14492 632 aaPredicted RBP18.16■□□□□ 0.5
UPF1-206ENST00000598471 RASA1P20936 1047 aa18.16■□□□□ 0.5
UPF1-206ENST00000598471 RASA3Q14644 834 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms