RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 COL9A1P20849 921 aa19.4■□□□□ 0.7
LIG1-214ENST00000597146 GCLCP48506 637 aaPredicted RBP19.4■□□□□ 0.7
LIG1-214ENST00000597146 MAP3K10Q02779 954 aa19.4■□□□□ 0.7
LIG1-214ENST00000597146 EXOSC9Q06265 439 aaKnown RBP19.4■□□□□ 0.7
LIG1-214ENST00000597146 PROCA1Q8NCQ7 364 aaPredicted RBP19.4■□□□□ 0.7
LIG1-214ENST00000597146 IDI2Q9BXS1 227 aa19.4■□□□□ 0.7
LIG1-214ENST00000597146 ASCC2Q9H1I8 757 aaPredicted RBP19.4■□□□□ 0.7
LIG1-214ENST00000597146 DDX4Q9NQI0 724 aaKnown RBP19.4■□□□□ 0.7
LIG1-214ENST00000597146 RAPGEFL1Q9UHV5 662 aa19.4■□□□□ 0.7
LIG1-214ENST00000597146 IL16Q14005 1332 aa19.4■□□□□ 0.7
LIG1-214ENST00000597146 CCND3P30281 292 aaPredicted RBP19.39■□□□□ 0.69
LIG1-214ENST00000597146 HMGCS2P54868 508 aa19.39■□□□□ 0.69
LIG1-214ENST00000597146 MYLIPQ8WY64 445 aa19.39■□□□□ 0.69
LIG1-214ENST00000597146 UTYO14607 1347 aa19.38■□□□□ 0.69
LIG1-214ENST00000597146 SLC5A1P13866 664 aa19.38■□□□□ 0.69
LIG1-214ENST00000597146 CACNB2Q08289 660 aaPredicted RBP19.38■□□□□ 0.69
LIG1-214ENST00000597146 SPP2Q13103 211 aa19.38■□□□□ 0.69
LIG1-214ENST00000597146 PICALMQ13492 652 aa19.38■□□□□ 0.69
LIG1-214ENST00000597146 LHX8Q68G74 356 aa19.38■□□□□ 0.69
LIG1-214ENST00000597146 LBHD1Q9BQE6 289 aaPredicted RBP19.38■□□□□ 0.69
LIG1-214ENST00000597146 CCDC184Q52MB2 194 aa19.37■□□□□ 0.69
LIG1-214ENST00000597146 RLFQ13129 1914 aa19.37■□□□□ 0.69
LIG1-214ENST00000597146 GAKO14976 1311 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 ZKSCAN1P17029 563 aaPredicted RBP19.36■□□□□ 0.69
LIG1-214ENST00000597146 CCL14Q16627 93 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 LPIN2Q92539 896 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 NUDT12Q9BQG2 462 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 SEMA6BQ9H3T3 888 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 MORF4L1Q9UBU8 362 aa19.36■□□□□ 0.69
LIG1-214ENST00000597146 SIPA1L1O43166 1804 aa19.35■□□□□ 0.69
LIG1-214ENST00000597146 SALL1Q9NSC2 1324 aa19.35■□□□□ 0.69
LIG1-214ENST00000597146 ZNF280CQ8ND82 737 aa19.35■□□□□ 0.69
LIG1-214ENST00000597146 TTYH1Q9H313 450 aaPredicted RBP19.35■□□□□ 0.69
LIG1-214ENST00000597146 ATN1P54259 1190 aaPredicted RBP19.34■□□□□ 0.69
LIG1-214ENST00000597146 PABPC4Q13310 644 aaKnown RBP eCLIP19.34■□□□□ 0.692e-6■■■■□ 26.1
LIG1-214ENST00000597146 SHHQ15465 462 aa19.34■□□□□ 0.69
LIG1-214ENST00000597146 C9orf50Q5SZB4 431 aa19.34■□□□□ 0.69
LIG1-214ENST00000597146 SOCS4Q8WXH5 440 aa19.34■□□□□ 0.69
LIG1-214ENST00000597146 SENP6Q9GZR1 1112 aaPredicted RBP19.34■□□□□ 0.69
LIG1-214ENST00000597146 TXNRD2Q9NNW7 524 aa19.34■□□□□ 0.69
LIG1-214ENST00000597146 XRCC5P13010 732 aaKnown RBP19.33■□□□□ 0.68
LIG1-214ENST00000597146 FOSL2P15408 326 aa19.33■□□□□ 0.68
LIG1-214ENST00000597146 RRP1BQ14684 758 aaKnown RBP19.33■□□□□ 0.68
LIG1-214ENST00000597146 EYA2O00167 538 aa19.32■□□□□ 0.68
LIG1-214ENST00000597146 BTDP43251 543 aa19.32■□□□□ 0.68
LIG1-214ENST00000597146 SYMPKQ92797 1274 aaKnown RBP19.32■□□□□ 0.68
LIG1-214ENST00000597146 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.32■□□□□ 0.68
LIG1-214ENST00000597146 PHKA1P46020 1223 aa19.31■□□□□ 0.68
LIG1-214ENST00000597146 IRX3P78415 501 aaPredicted RBP19.31■□□□□ 0.68
LIG1-214ENST00000597146 PDE3AQ14432 1141 aa19.31■□□□□ 0.68
LIG1-214ENST00000597146 DZIP1Q86YF9 867 aaKnown RBP19.31■□□□□ 0.68
LIG1-214ENST00000597146 FAM9BQ8IZU0 186 aa19.31■□□□□ 0.68
LIG1-214ENST00000597146 USP6NLQ92738 828 aa19.31■□□□□ 0.68
LIG1-214ENST00000597146 OSBPL5Q9H0X9 879 aaPredicted RBP19.31■□□□□ 0.68
LIG1-214ENST00000597146 RFX5P48382 616 aaPredicted RBP19.3■□□□□ 0.68
LIG1-214ENST00000597146 ATP2B3Q16720 1220 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 SH3D19Q5HYK7 790 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 ATG9AQ7Z3C6 839 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 TRMT44Q8IYL2 757 aaKnown RBP19.3■□□□□ 0.68
LIG1-214ENST00000597146 P2RX7Q99572 595 aaKnown RBP19.3■□□□□ 0.68
LIG1-214ENST00000597146 APBA2Q99767 749 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 PORCNQ9H237 461 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 PRKAG2Q9UGJ0 569 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 DENND2AQ9ULE3 1009 aa19.3■□□□□ 0.68
LIG1-214ENST00000597146 SALL2Q9Y467 1007 aaPredicted RBP19.3■□□□□ 0.68
LIG1-214ENST00000597146 TNFRSF10AO00220 468 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 TBC1D12O60347 775 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 RGS2P41220 211 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 RTP1P59025 263 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 HERVK_113P62684 666 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 MTMR2Q13614 643 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 USP38Q8NB14 1042 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 GPRC5AQ8NFJ5 357 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 GNL3LQ9NVN8 582 aaKnown RBP19.29■□□□□ 0.68
LIG1-214ENST00000597146 BDP1A6H8Y1 2624 aa19.29■□□□□ 0.68
LIG1-214ENST00000597146 CDK5RAP2Q96SN8 1893 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 USP17L5A8MUK1 530 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 CAP2P40123 477 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 MORN1Q5T089 497 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 GPR142Q7Z601 462 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 ATP11BQ9Y2G3 1177 aa19.28■□□□□ 0.68
LIG1-214ENST00000597146 NCOR1O75376 2440 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 MROH7-TTC4A0A0A0MT08 1334 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 MAPK4P31152 587 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 RHBDL3P58872 404 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 Q3C1V9 767 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 TJAP1Q5JTD0 557 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 PAGR1Q9BTK6 254 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 TBC1D2Q9BYX2 928 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 SIL1Q9H173 461 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 FLRT1Q9NZU1 646 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 RBPJLQ9UBG7 517 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 ABCF2Q9UG63 623 aa19.27■□□□□ 0.68
LIG1-214ENST00000597146 SEMA3EO15041 775 aa19.26■□□□□ 0.67
LIG1-214ENST00000597146 ADORA1P30542 326 aa19.26■□□□□ 0.67
LIG1-214ENST00000597146 ERVK-9P63128 1117 aa19.26■□□□□ 0.67
LIG1-214ENST00000597146 ERVK-24P63145 666 aa19.26■□□□□ 0.67
LIG1-214ENST00000597146 SMAD3P84022 425 aaKnown RBP19.26■□□□□ 0.67
LIG1-214ENST00000597146 POTEEQ6S8J3 1075 aa19.26■□□□□ 0.67
LIG1-214ENST00000597146 ZGPATQ8N5A5 531 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms