RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TESPA1A2RU30 521 aaPredicted RBP13.48□□□□□ -0.25
VRK3-210ENST00000596121 SMIM22K7EJ46 135 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 IRF6O14896 467 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 ERC2O15083 957 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 RNF113AO15541 343 aaKnown RBP13.48□□□□□ -0.25
VRK3-210ENST00000596121 PDE4AP27815 886 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 PLCD1P51178 756 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 CCDC84Q86UT8 332 aaPredicted RBP13.48□□□□□ -0.25
VRK3-210ENST00000596121 ERO1BQ86YB8 467 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 SDR42E1Q8WUS8 393 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 BRI3BPQ8WY22 251 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 OSBP2Q969R2 916 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.48□□□□□ -0.252e-7■■■□□ 18.9
VRK3-210ENST00000596121 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.48□□□□□ -0.25
VRK3-210ENST00000596121 PI4KBQ9UBF8 816 aa13.48□□□□□ -0.25
VRK3-210ENST00000596121 MANSC4A6NHS7 340 aaPredicted RBP13.47□□□□□ -0.25
VRK3-210ENST00000596121 CYP2D6P10635 497 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 USP5P45974 858 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 MOGSQ13724 837 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 IFNL1Q8IU54 200 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 REM2Q8IYK8 340 aaPredicted RBP13.47□□□□□ -0.25
VRK3-210ENST00000596121 SCYL3Q8IZE3 742 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 BEGAINQ9BUH8 593 aa13.47□□□□□ -0.25
VRK3-210ENST00000596121 DHX36Q9H2U1 1008 aaKnown RBP13.47□□□□□ -0.25
VRK3-210ENST00000596121 DCP1AQ9NPI6 582 aaPredicted RBP13.47□□□□□ -0.25
VRK3-210ENST00000596121 M0R2C6 588 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 CTNND1O60716 968 aaKnown RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 TBC1D8O95759 1140 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 PTPRAP18433 802 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 PPATQ06203 517 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 SREBF2Q12772 1141 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 PPIL2Q13356 520 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 ZSCAN25Q6NSZ9 544 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 CERS3Q8IU89 383 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 FOXP4Q8IVH2 680 aaPredicted RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 STRBPQ96SI9 672 aaKnown RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 SEC62Q99442 399 aaKnown RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 CRNKL1Q9BZJ0 848 aaKnown RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 SAGE1Q9NXZ1 904 aa13.46□□□□□ -0.25
VRK3-210ENST00000596121 ZBTB47Q9UFB7 747 aaPredicted RBP13.46□□□□□ -0.25
VRK3-210ENST00000596121 MYH7P12883 1935 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 CYP2D7A0A087X1C5 515 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 CCL15-CCL14A0A0B4J2E2 113 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 CA12O43570 354 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 CAP2P40123 477 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 CCL15Q16663 113 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 FAM43AQ8N2R8 423 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 APPBP2Q92624 585 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 OSBPL3Q9H4L5 887 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 PRDM10Q9NQV6 1147 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 MCM9Q9NXL9 1143 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 HERC5Q9UII4 1024 aaKnown RBP13.45□□□□□ -0.26
VRK3-210ENST00000596121 KCNH4Q9UQ05 1017 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 ZHX2Q9Y6X8 837 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 LAMB1P07942 1786 aa13.45□□□□□ -0.26
VRK3-210ENST00000596121 DDX60LQ5H9U9 1706 aaKnown RBP13.44□□□□□ -0.26
VRK3-210ENST00000596121 GTF2A2P52657 109 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 INHBEP58166 350 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 GABPAQ06546 454 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 ZMYM1Q5SVZ6 1142 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 FSD1Q9BTV5 496 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 AFG3L2Q9Y4W6 797 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 SLC4A4Q9Y6R1 1079 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 MYH1P12882 1939 aa13.44□□□□□ -0.26
VRK3-210ENST00000596121 GSG1L2A8MUP6 293 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 BTBD19C9JJ37 291 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 GDF11O95390 407 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 ZFYP08048 801 aaPredicted RBP13.43□□□□□ -0.26
VRK3-210ENST00000596121 SHMT1P34896 483 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 SNAPC2Q13487 334 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 TATDN1Q6P1N9 297 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 EVI5LQ96CN4 794 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 DYNLL2Q96FJ2 89 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 EHD4Q9H223 541 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 PICK1Q9NRD5 415 aa13.43□□□□□ -0.26
VRK3-210ENST00000596121 CASP8AP2Q9UKL3 1982 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 PHIPQ8WWQ0 1821 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 USP17L12C9JPN9 530 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 USP17L21D6R901 530 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 FOXP2O15409 715 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 GPAA1O43292 621 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 POLR3DP05423 398 aaPredicted RBP13.42□□□□□ -0.26
VRK3-210ENST00000596121 HLA-DOAP06340 250 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CETPP11597 493 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 GPAT2Q6NUI2 795 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CTR9Q6PD62 1173 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CCDC129Q6ZRS4 1044 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 TTC6Q86TZ1 520 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CRACR2BQ8N4Y2 399 aaPredicted RBP13.42□□□□□ -0.26
VRK3-210ENST00000596121 SLC44A5Q8NCS7 719 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CFHR5Q9BXR6 569 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 EPB41L4AQ9HCS5 686 aaPredicted RBP13.42□□□□□ -0.26
VRK3-210ENST00000596121 ATP8A2Q9NTI2 1148 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 SERPINB13Q9UIV8 391 aa13.42□□□□□ -0.26
VRK3-210ENST00000596121 CXCL11O14625 94 aa13.41□□□□□ -0.26
VRK3-210ENST00000596121 CRHR2Q13324 411 aa13.41□□□□□ -0.26
VRK3-210ENST00000596121 DGKZQ13574 1117 aa13.41□□□□□ -0.26
VRK3-210ENST00000596121 C12orf60Q5U649 245 aa13.41□□□□□ -0.26
VRK3-210ENST00000596121 SKAP1Q86WV1 359 aa13.41□□□□□ -0.26
VRK3-210ENST00000596121 FAM227BQ96M60 508 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms