RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 EFCAB6Q5THR3 1501 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 LRRD1A4D1F6 860 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 ENC1O14682 589 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 TRIM21P19474 475 aaKnown RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 CCT6AP40227 531 aaKnown RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 AFMP43652 599 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 PNOCQ13519 176 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 LRRC23Q53EV4 343 aaPredicted RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 TRIM22Q8IYM9 498 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 C19orf44Q9H6X5 657 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 LGR6Q9HBX8 967 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 WWC3Q9ULE0 1092 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 LUC7L2Q9Y383 392 aaKnown RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 SOWAHDA6NJG2 315 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 SPAG1Q07617 926 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 CCDC6Q16204 474 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 CCDC178Q5BJE1 867 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 GKAP1Q5VSY0 366 aaPredicted RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 NSRP1Q9H0G5 558 aaKnown RBP13.8□□□□□ -0.2
LIG1-207ENST00000594759 ARHGAP31Q2M1Z3 1444 aa13.8□□□□□ -0.2
LIG1-207ENST00000594759 PFKFB1P16118 471 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 HAND2P61296 217 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 NBPF6Q5VWK0 638 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 NBPF5PQ86XG9 351 aaPredicted RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 AMOTL1Q8IY63 956 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 MLKLQ8NB16 471 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 FBF1Q8TES7 1133 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 NBPF4Q96M43 638 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 ZBTB3Q9H5J0 574 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 GOPCQ9HD26 462 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 ZFYVE9O95405 1425 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 PLEKHG3A1L390 1219 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 AKR1B10O60218 316 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 MYO1EQ12965 1108 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 DHX32Q7L7V1 743 aaKnown RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 KIRREL3Q8IZU9 778 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 TSC22D3Q99576 134 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 NBPF3Q9H094 633 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 CEP131Q9UPN4 1083 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 VWA3AA6NCI4 1184 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 RESTQ13127 1097 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 DBN1Q16643 649 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 FAM43BQ6ZT52 329 aaPredicted RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 DDX46Q7L014 1031 aaKnown RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 CCDC63Q8NA47 563 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 NFATC2IPQ8NCF5 419 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 COG1Q8WTW3 980 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 THOC1Q96FV9 657 aaKnown RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 SPAG5Q96R06 1193 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 IL25Q9H293 177 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 KIF9Q9HAQ2 790 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 KIF1BO60333 1816 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 LUC7L3O95232 432 aaKnown RBP13.79□□□□□ -0.2
LIG1-207ENST00000594759 IFT20Q8IY31 132 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 CCDC170Q8IYT3 715 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 TRIM4Q9C037 500 aa13.79□□□□□ -0.2
LIG1-207ENST00000594759 TET3O43151 1660 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 RANBP1P43487 201 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 GNPTABQ3T906 1256 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 FAM53CQ9NYF3 392 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 UNC13BO14795 1591 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 ERICH2A1L162 156 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 EIF3HO15372 352 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIG1-207ENST00000594759 NNTQ13423 1086 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 NBPF14Q5TI25 921 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 ZBTB10Q96DT7 871 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 SELENOOQ9BVL4 669 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 KCNH3Q9ULD8 1083 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 TPX2Q9ULW0 747 aaKnown RBP13.78□□□□□ -0.2
LIG1-207ENST00000594759 KLF18A0A0U1RQI7 1052 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 A0A1W2PQ27 194 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 A0A1W2PQ64 194 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 A0A1W2PQD8 194 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 SKAP2O75563 359 aaPredicted RBP13.78□□□□□ -0.2
LIG1-207ENST00000594759 TTC39AQ5SRH9 613 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 JAKMIP2Q96AA8 810 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 VPS16Q9H269 839 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 BATF3Q9NR55 127 aa13.78□□□□□ -0.2
LIG1-207ENST00000594759 TMEM232C9JQI7 657 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 GCOM1H8Y6P7 765 aaPredicted RBP13.77□□□□□ -0.2
LIG1-207ENST00000594759 RPS6KA5O75582 802 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 MYZAPP0CAP1 466 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 UBXN1Q04323 297 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 TRAF1Q13077 416 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 CCDC82Q8N4S0 544 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 SELENOSQ9BQE4 189 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 VIPAS39Q9H9C1 493 aa13.77□□□□□ -0.2
LIG1-207ENST00000594759 VIMP08670 466 aaKnown RBP13.77□□□□□ -0.21
LIG1-207ENST00000594759 NBPF9Q3BBW0 867 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 IFNL2Q8IZJ0 200 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 TBC1D22AQ8WUA7 517 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 IFT74Q96LB3 600 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 PSMB7Q99436 277 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 VCXQ9H320 206 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 SWAP70Q9UH65 585 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 KIF6Q6ZMV9 814 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 CCDC42Q96M95 316 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 PNKPQ96T60 521 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 USP44Q9H0E7 712 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 GOLPH3LQ9H4A5 285 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms