RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	DIP2A	Q14689	1571 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	KNDC1	Q76NI1	1749 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790		A0A0G2JS52	829 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC194	A0A1B0GVG4	234 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CYP21A2	P08686	494 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	TMEM266	Q2M3C6	531 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	SPATA1	Q5VX52	437 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	LDHAL6A	Q6ZMR3	332 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CROCCP2	Q86T23	111 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CPLX3	Q8WVH0	158 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	PGBD1	Q96JS3	809 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	GSDMA	Q96QA5	445 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	NUCKS1	Q9H1E3	243 aa	Known RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	FOXP1	Q9H334	677 aa	Predicted RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	MAGEF1	Q9HAY2	307 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	UTY	O14607	1347 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA8K	D6RF30	607 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	GC	P02774	474 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	MYL1	P05976	194 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	TRIM21	P19474	475 aa	Known RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	UBA7	P41226	1012 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	MTIF2	P46199	727 aa	Known RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	NLRP5	P59047	1200 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	HAND2	P61296	217 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	ZRSR2	Q15696	482 aa	Known RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CLUL1	Q15846	466 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	KMT5B	Q4FZB7	885 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	MUM1L1	Q5H9M0	696 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	SLC9C2	Q5TAH2	1124 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	WWC2	Q6AWC2	1192 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CACNA2D4	Q7Z3S7	1137 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	NOSTRIN	Q8IVI9	506 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	EFCAB13	Q8IY85	973 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC155	Q8N6L0	562 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	ZNF579	Q8NAF0	562 aa	Known RBP	3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	CALML4	Q96GE6	196 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	FAM117A	Q9C073	453 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	JADE2	Q9NQC1	790 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	RSPH14	Q9UHP6	348 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	MAP3K15	Q6ZN16	1313 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	NCKAP5L	Q9HCH0	1330 aa		3.99	□□□□□ -1.77
VMP1-216	ENST00000592790	PLEKHG2	Q9H7P9	1386 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CYP2C19	P33261	490 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CCZ1B	P86790	482 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CCZ1	P86791	482 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PDE4B	Q07343	736 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	GIGYF2	Q6Y7W6	1299 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	KRT28	Q7Z3Y7	464 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DHX40	Q8IX18	779 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	RETREG2	Q8NC44	543 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ZNF526	Q8TF50	670 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	TRIM47	Q96LD4	638 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	TRIM34	Q9BYJ4	488 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	LZTFL1	Q9NQ48	299 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CEMIP	Q8WUJ3	1361 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PCDH11X	Q9BZA7	1347 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PCDH11Y	Q9BZA8	1340 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	SASH1	O94885	1247 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PRPH	P41219	470 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	STAT6	P42226	847 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	KIF23	Q02241	960 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PAK1	Q13153	545 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	KARS	Q15046	597 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	LONRF2	Q1L5Z9	754 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DPCR1	Q3MIW9	517 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ODF2	Q5BJF6	829 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CAVIN4	Q5BKX8	364 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	NBPF14	Q5TI25	921 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ARHGEF25	Q86VW2	580 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	C10orf67	Q8IYJ2	551 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	LMBR1	Q8WVP7	490 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	RBM33	Q96EV2	1170 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CDC5L	Q99459	802 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	SELENOO	Q9BVL4	669 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	STMN4	Q9H169	189 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	LGR6	Q9HBX8	967 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	EXOC1	Q9NV70	894 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	TMOD3	Q9NYL9	352 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DBNL	Q9UJU6	430 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ZNF652	Q9Y2D9	606 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ATP5J2-PTCD1	G3V325	749 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790		H7C1D1	291 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	GCOM1	H8Y6P7	765 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	MAFG	O15525	162 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	GPAA1	O43292	621 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PPP1R12B	O60237	982 aa	Predicted RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	PTCD1	O75127	700 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	MYZAP	P0CAP1	466 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	TRAPPC10	P48553	1259 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	UBXN1	Q04323	297 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	UBE3C	Q15386	1083 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC122	Q5T0U0	273 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	NBPF6	Q5VWK0	638 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	ISM2	Q6H9L7	571 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC129	Q6ZRS4	1044 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	TOM1L2	Q6ZVM7	507 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DIS3L2	Q8IYB7	885 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	FBXL16	Q8N461	479 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DDX12P	Q92771	950 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	DHX58	Q96C10	678 aa		3.98	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms