RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TRIM37	O94972	964 aa		13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	FDPS	P14324	419 aa	Known RBP	13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	PDIA3	P30101	505 aa	Known RBP	13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GOLGA8F	Q08AF8	430 aa		13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	GOLGA8DP	Q0D2H9	430 aa		13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	AMIGO3	Q86WK7	504 aa		13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.33	□□□□□ -0.27
CDK5RAP3-231	ENST00000584063	TJP1	Q07157	1748 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	NAT2	P11245	290 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IQCB1	Q15051	598 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CCDC158	Q5M9N0	1113 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CEP135	Q66GS9	1140 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CCDC73	Q6ZRK6	1079 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LRRC8A	Q8IWT6	810 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TDRD7	Q8NHU6	1098 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SMARCC2	Q8TAQ2	1214 aa		13.33	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CCDC69	A6NI79	296 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	UBE2Q2L	H0YL09	131 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	KIN	O60870	393 aa	Known RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	MCCD1	P59942	119 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	C11orf96	Q7Z7L8	435 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	AIFM3	Q96NN9	605 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TMX1	Q9H3N1	280 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SENP2	Q9HC62	589 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZNF215	Q9UL58	517 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZNF652	Q9Y2D9	606 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PAPPA	Q13219	1627 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CSF1R	P07333	972 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	GYS2	P54840	703 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IRF2BPL	Q9H1B7	796 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CLIC4	Q9Y696	253 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LAMB4	A4D0S4	1761 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SMC2	O95347	1197 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	FGA	P02671	866 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	MARCKS	P29966	332 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	BIRC2	Q13490	618 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SNW1	Q13573	536 aa	Known RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	DNAJC21	Q5F1R6	531 aa	Known RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ST7	Q9NRC1	585 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	HELLS	Q9NRZ9	838 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CFAP45	Q9UL16	551 aa		13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	RTCB	Q9Y3I0	505 aa	Known RBP	13.32	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CARNS1	A5YM72	827 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ERFE	Q4G0M1	354 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TBC1D9B	Q66K14	1250 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LRRN4CL	Q8ND94	238 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LAMA4	Q16363	1823 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TPM3	P06753	285 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	NDUFA8	P51970	172 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	DPCR1	Q3MIW9	517 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	FAM196A	Q6ZSG2	479 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	HS6ST3	Q8IZP7	471 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	DSCC1	Q9BVC3	393 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PCDHA7	Q9UN72	937 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	AKAP2	Q9Y2D5	859 aa		13.31	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.3	□□□□□ -0.28	7e-19	■□□□□ 10
CDK5RAP3-231	ENST00000584063	RFC4	P35249	363 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	MCAM	P43121	646 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ANTXR2	P58335	489 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	DHX40	Q8IX18	779 aa	Known RBP	13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ANKRD7	Q92527	254 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PTPN14	Q15678	1187 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ELF2	Q15723	593 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	AK7	Q96M32	723 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SETDB2	Q96T68	719 aa		13.3	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	KLF18	A0A0U1RQI7	1052 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	WTIP	A6NIX2	430 aa	Predicted RBP	13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CTIF	O43310	598 aa	Known RBP	13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	C3orf67	Q6ZVT6	689 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	KIF28P	B7ZC32	967 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PRC1	O43663	620 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CIAO1	O76071	339 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LMOD1	P29536	600 aa	Predicted RBP	13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	STX1A	Q16623	288 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	TMC6	Q7Z403	805 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	MYL10	Q9BUA6	226 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	NBPF3	Q9H094	633 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	GNL3L	Q9NVN8	582 aa	Known RBP	13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	NUP188	Q5SRE5	1749 aa		13.29	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CARMIL3	Q8ND23	1372 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	SMTNL1	A8MU46	457 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	GPAA1	O43292	621 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IDH1	O75874	414 aa	Known RBP	13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IGHMBP2	P38935	993 aa	Known RBP	13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CCDC152	Q4G0S7	254 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	RBM43	Q6ZSC3	357 aa	Known RBP	13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PLA2G12B	Q9BX93	195 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PIH1D3	Q9NQM4	214 aa	Known RBP	13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	IFNK	Q9P0W0	207 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	MYH14	Q7Z406	1995 aa	Known RBP	13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	CDHR2	Q9BYE9	1310 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	GOLGA8B	A8MQT2	603 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	STK38	Q15208	465 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	PARP10	Q53GL7	1025 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	LRRC4B	Q9NT99	713 aa		13.28	□□□□□ -0.28
CDK5RAP3-231	ENST00000584063	HPS5	Q9UPZ3	1129 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms