RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CNTNAP1P78357 1384 aa28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 DHX32Q7L7V1 743 aaKnown RBP28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 TTC6Q86TZ1 520 aa28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 ZSCAN29Q8IWY8 852 aaPredicted RBP28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 SLC44A5Q8NCS7 719 aa28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 L3MBTL3Q96JM7 780 aaPredicted RBP28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.43■■■□□ 2.14
ATPAF1-213ENST00000574428 DDTLA6NHG4 134 aaPredicted RBP28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 FKBP1CQ5VVH2 108 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 KRT23Q9C075 422 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 SCAF8Q9UPN6 1271 aaKnown RBP28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 DCAF8L1A6NGE4 600 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 KDM4AO75164 1064 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 FGRP09769 529 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 PDE4BQ07343 736 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 LRRC2Q9BYS8 371 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 TBC1D2Q9BYX2 928 aa28.42■■■□□ 2.14
ATPAF1-213ENST00000574428 HLA-DOAP06340 250 aa28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 HIRAP54198 1017 aaPredicted RBP28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 EXOSC10Q01780 885 aaKnown RBP28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 NOL8Q76FK4 1167 aaKnown RBP28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 CYB5R4Q7L1T6 521 aa28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 SNX21Q969T3 373 aa28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 DHX36Q9H2U1 1008 aaKnown RBP28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 ADARB2Q9NS39 739 aaKnown RBP28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 HACL1Q9UJ83 578 aa28.41■■■□□ 2.14
ATPAF1-213ENST00000574428 PCP11498 1178 aaKnown RBP28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 MCM5P33992 734 aa28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 AK2P54819 239 aa28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 ANTXR2P58335 489 aa28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 FAM151AQ8WW52 585 aa28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 ATRNL1Q5VV63 1379 aa28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 COL2A1P02458 1487 aaPredicted RBP28.4■■■□□ 2.14
ATPAF1-213ENST00000574428 PRC1O43663 620 aa28.39■■■□□ 2.14
ATPAF1-213ENST00000574428 C16orf86Q6ZW13 317 aa28.39■■■□□ 2.14
ATPAF1-213ENST00000574428 HSCBQ8IWL3 235 aa28.39■■■□□ 2.14
ATPAF1-213ENST00000574428 SIPA1L1O43166 1804 aa28.39■■■□□ 2.14
ATPAF1-213ENST00000574428 ORC4O43929 436 aa28.39■■■□□ 2.13
ATPAF1-213ENST00000574428 FAM83AQ86UY5 434 aa28.39■■■□□ 2.13
ATPAF1-213ENST00000574428 LARP6Q9BRS8 491 aaKnown RBP28.39■■■□□ 2.13
ATPAF1-213ENST00000574428 TMEM39BQ9GZU3 492 aa28.39■■■□□ 2.13
ATPAF1-213ENST00000574428 ZSWIM5Q9P217 1185 aa28.39■■■□□ 2.13
ATPAF1-213ENST00000574428 SLURP2P0DP57 97 aa28.38■■■□□ 2.13
ATPAF1-213ENST00000574428 ANGEL2Q5VTE6 544 aaKnown RBP28.38■■■□□ 2.13
ATPAF1-213ENST00000574428 ESR2Q92731 530 aa28.38■■■□□ 2.13
ATPAF1-213ENST00000574428 MKNK2Q9HBH9 465 aa28.38■■■□□ 2.13
ATPAF1-213ENST00000574428 SERPINB13Q9UIV8 391 aa28.38■■■□□ 2.13
ATPAF1-213ENST00000574428 RANBP6O60518 1105 aaKnown RBP28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 CDK8P49336 464 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 GABPAQ06546 454 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 Q6ZUG5 572 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 BECN1Q14457 450 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 CDAN1Q8IWY9 1227 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 CSRNP1Q96S65 589 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 EHD4Q9H223 541 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 GGA3Q9NZ52 723 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 PI4KBQ9UBF8 816 aa28.37■■■□□ 2.13
ATPAF1-213ENST00000574428 TNNI2P48788 182 aa28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 FGD1P98174 961 aa28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 TNFAIP1Q13829 316 aa28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 TOB2Q14106 344 aaPredicted RBP28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 RASA3Q14644 834 aa28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 IL27Q8NEV9 243 aa28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 GPHNQ9NQX3 736 aaPredicted RBP28.36■■■□□ 2.13
ATPAF1-213ENST00000574428 FAM47AQ5JRC9 791 aa28.35■■■□□ 2.13
ATPAF1-213ENST00000574428 CRACR2BQ8N4Y2 399 aaPredicted RBP28.35■■■□□ 2.13
ATPAF1-213ENST00000574428 WDR19Q8NEZ3 1342 aa28.35■■■□□ 2.13
ATPAF1-213ENST00000574428 FAM196BA6NMK8 535 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 EPHX2P34913 555 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 SLC4A3P48751 1232 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 ZKSCAN3Q9BRR0 538 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 ALDH8A1Q9H2A2 487 aaPredicted RBP28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 ZNF287Q9HBT7 754 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 RASA1P20936 1047 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 DNAJC18Q9H819 358 aa28.34■■■□□ 2.13
ATPAF1-213ENST00000574428 K7ELQ4 463 aaPredicted RBP28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 MCM2P49736 904 aa28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 APOBEC3FQ8IUX4 373 aaKnown RBP28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 BRF1Q92994 677 aa28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 WDR90Q96KV7 1748 aa28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 SWAP70Q9UH65 585 aa28.33■■■□□ 2.13
ATPAF1-213ENST00000574428 SHMT1P34896 483 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 ZNF444Q8N0Y2 327 aaPredicted RBP28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 TRIM34Q9BYJ4 488 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 PGAP2Q9UHJ9 254 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 SCN4AP35499 1836 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 TSPY2A6NKD2 308 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 POTECB2RU33 542 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 TFAP4Q01664 338 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 ANKRD1Q15327 319 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 DEFB129Q9H1M3 183 aa28.32■■■□□ 2.12
ATPAF1-213ENST00000574428 IQCA1LA6NCM1 817 aa28.31■■■□□ 2.12
ATPAF1-213ENST00000574428 FOXP4Q8IVH2 680 aaPredicted RBP28.31■■■□□ 2.12
ATPAF1-213ENST00000574428 AGXT2Q9BYV1 514 aa28.31■■■□□ 2.12
ATPAF1-213ENST00000574428 SH2B2O14492 632 aaPredicted RBP28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 IFIT3O14879 490 aaKnown RBP28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 TMEM67Q5HYA8 995 aa28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 USP50Q70EL3 339 aaPredicted RBP28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 TMEM87BQ96K49 555 aa28.3■■■□□ 2.12
ATPAF1-213ENST00000574428 TEPSINQ96N21 525 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms