RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	DHX8	Q14562	1220 aa	Known RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	CPXCR1	Q8N123	301 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	PI4KB	Q9UBF8	816 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	PNPLA7	Q6ZV29	1317 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	DTNB	O60941	627 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	BAG4	O95429	457 aa	Known RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	STRIP1	Q5VSL9	837 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	ZNF654	Q8IZM8	581 aa		11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.64	□□□□□ -0.55
SMG6-213	ENST00000573166	SPDYE3	A6NKU9	549 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	GNA11	P29992	359 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	MIGA2	Q7L4E1	593 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	PNMA1	Q8ND90	353 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	TNMD	Q9H2S6	317 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	ZSCAN22	P10073	491 aa	Predicted RBP	11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	LRRC47	Q8N1G4	583 aa	Known RBP	11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	DYNLL2	Q96FJ2	89 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	PC	P11498	1178 aa	Known RBP	11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	FBXO33	Q7Z6M2	555 aa		11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	TNPO1	Q92973	898 aa	Known RBP	11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.63	□□□□□ -0.55
SMG6-213	ENST00000573166	ADCK5	Q3MIX3	580 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	CEP57L1	Q8IYX8	460 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	NAT10	Q9H0A0	1025 aa	Known RBP	11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	AS3MT	Q9HBK9	375 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	GOPC	Q9HD26	462 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	KLRK1	P26718	216 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	RNF214	Q8ND24	703 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	PHKB	Q93100	1093 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	INTS4	Q96HW7	963 aa	Known RBP	11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	MPHOSPH6	Q99547	160 aa	Known RBP	11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	POLL	Q9UGP5	575 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	MROH7-TTC4	A0A0A0MT08	1334 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	GDF11	O95390	407 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	IRX3	P78415	501 aa	Predicted RBP	11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	TCP11L1	Q9NUJ3	509 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	SWAP70	Q9UH65	585 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	SAMM50	Q9Y512	469 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	hCG_1642624	A0A1W2PR95	340 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	PPP2R5B	Q15173	497 aa		11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	TMED8	Q6PL24	325 aa	Predicted RBP	11.62	□□□□□ -0.55
SMG6-213	ENST00000573166	DEXI	O95424	95 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	TPM3	P06753	285 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	UBA7	P41226	1012 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	TICAM2	Q86XR7	235 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	CAMKK2	Q96RR4	588 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	MXD3	Q9BW11	206 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	ZSWIM6	Q9HCJ5	1215 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	TM4SF1	P30408	202 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	MRPL12	P52815	198 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	NSUN4	Q96CB9	384 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	CNOT7	Q9UIV1	285 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	MED23	Q9ULK4	1368 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	TSR1	Q2NL82	804 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	FCHSD1	Q86WN1	690 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	TDRD7	Q8NHU6	1098 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	SUGT1	Q9Y2Z0	365 aa		11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.61	□□□□□ -0.55
SMG6-213	ENST00000573166	LETM1	O95202	739 aa	Predicted RBP	11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	KIAA2012	Q0VF49	1180 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	CHURC1	Q8WUH1	139 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	KIFC2	Q96AC6	838 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	NUP62CL	Q9H1M0	184 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	TPM1	P09493	284 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	TOP1	P11387	765 aa	Known RBP	11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	TXNRD3	Q86VQ6	643 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	MICALL2	Q8IY33	904 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	CCDC39	Q9UFE4	941 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	MRC1	P22897	1456 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	FAM43A	Q8N2R8	423 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	PDILT	Q8N807	584 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	CD2AP	Q9Y5K6	639 aa		11.6	□□□□□ -0.55
SMG6-213	ENST00000573166	TRIM75P	A6NK02	468 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	PSMD14	O00487	310 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	GOLGA8H	P0CJ92	632 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	CYP2D6	P10635	497 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	SYT1	P21579	422 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	ADD1	P35611	737 aa	Known RBP	11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	KRT2	P35908	639 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	SLFN13	Q68D06	897 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	SPICE1	Q8N0Z3	855 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	FANCB	Q8NB91	859 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	LLPH	Q9BRT6	129 aa	Known RBP	11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	KANSL2	Q9H9L4	492 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	ZBED4	O75132	1171 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	USH1G	Q495M9	461 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	CMTR1	Q8N1G2	835 aa	Known RBP	11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	LZTS2	Q9BRK4	669 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	LRP6	O75581	1613 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166		B4DLN1	442 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	KLRF2	D3W0D1	207 aa		11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	HOXA10	P31260	410 aa	Predicted RBP	11.59	□□□□□ -0.55
SMG6-213	ENST00000573166	CDK8	P49336	464 aa		11.59	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms