RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RTN1Q16799 776 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 PIGBQ92521 554 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 NOL10Q9BSC4 688 aaKnown RBP19.58■□□□□ 0.72
VPS53-215ENST00000573028 TACC3Q9Y6A5 838 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 PHLPP2Q6ZVD8 1323 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 VWA3AA6NCI4 1184 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 ARHGAP6O43182 974 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 OXER1Q8TDS5 423 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 CABP5Q9NP86 173 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 FHOD1Q9Y613 1164 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 MAP3K15Q6ZN16 1313 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 CASP1P29466 404 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.57■□□□□ 0.72
VPS53-215ENST00000573028 WTAPQ15007 396 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 CREBRFQ8IUR6 639 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 SPATA5Q8NB90 893 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 PARP3Q9Y6F1 533 aa19.57■□□□□ 0.72
VPS53-215ENST00000573028 ERICH2A1L162 156 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 MINDY4BA8MYZ0 360 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 PATL2C9JE40 543 aaKnown RBP19.56■□□□□ 0.72
VPS53-215ENST00000573028 MMP1P03956 469 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 MAP3K12Q12852 859 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 DHX58Q96C10 678 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 SLC4A4Q9Y6R1 1079 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 FMNL1O95466 1100 aaPredicted RBP19.56■□□□□ 0.72
VPS53-215ENST00000573028 COL18A1P39060 1754 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 MTF1Q14872 753 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 AKNAD1Q5T1N1 836 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 PLA2G12BQ9BX93 195 aa19.56■□□□□ 0.72
VPS53-215ENST00000573028 IRX2Q9BZI1 471 aaPredicted RBP19.56■□□□□ 0.72
VPS53-215ENST00000573028 KCPQ6ZWJ8 1503 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 RASGRF1Q13972 1273 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 SPECC1LQ69YQ0 1117 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 SGMS1Q86VZ5 419 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 LAMB4A4D0S4 1761 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 COBLO75128 1261 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 SPEF2Q9C093 1822 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 TCRBV5S4A2TA0A5A2 114 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 FAM205CA6NFA0 338 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 TADA3O75528 432 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 SART3Q15020 963 aaKnown RBP19.55■□□□□ 0.72
VPS53-215ENST00000573028 LCORLQ8N3X6 602 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 VGLL2Q8N8G2 317 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 WASF1Q92558 559 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 LZTFL1Q9NQ48 299 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 SEC31BQ9NQW1 1179 aa19.55■□□□□ 0.72
VPS53-215ENST00000573028 FBXO2Q9UK22 296 aaPredicted RBP19.55■□□□□ 0.72
VPS53-215ENST00000573028 UQCRFS1P1P0C7P4 283 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 IFNAR1P17181 557 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 TMEM139Q8IV31 216 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 ZBTB1Q9Y2K1 713 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 TUBB4AP04350 444 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 PUM3Q15397 648 aaKnown RBP19.54■□□□□ 0.72
VPS53-215ENST00000573028 TC2NQ8N9U0 490 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 STAMQ92783 540 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 CCDC34Q96HJ3 373 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 CSRNP2Q9H175 543 aa19.54■□□□□ 0.72
VPS53-215ENST00000573028 LIFRP42702 1097 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 MDM2Q00987 491 aaPredicted RBP19.53■□□□□ 0.72
VPS53-215ENST00000573028 NKX1-1Q15270 411 aaPredicted RBP19.53■□□□□ 0.72
VPS53-215ENST00000573028 SMYD4Q8IYR2 804 aaPredicted RBP19.53■□□□□ 0.72
VPS53-215ENST00000573028 MPHOSPH8Q99549 860 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 ABCC12Q96J65 1359 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 NUP188Q5SRE5 1749 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 GSG1L2A8MUP6 293 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 SMIM22K7EJ46 135 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 PTPREP23469 700 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 PLA2G4AP47712 749 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 CCDC12Q8WUD4 166 aaPredicted RBP19.53■□□□□ 0.72
VPS53-215ENST00000573028 LPIN2Q92539 896 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 RILPL1Q5EBL4 403 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 LRP2BPQ9P2M1 347 aa19.53■□□□□ 0.72
VPS53-215ENST00000573028 FAM237AA0A1B0GTK4 181 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 TEX33O43247 280 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 PRDM1O75626 825 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 BCAMP50895 628 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 AKAP17AQ02040 695 aaKnown RBP19.52■□□□□ 0.72
VPS53-215ENST00000573028 PPP2R3AQ06190 1150 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 UBAC1Q9BSL1 405 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 NACAP1Q9BZK3 213 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 KRT23Q9C075 422 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 FAM53CQ9NYF3 392 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 VPS54Q9P1Q0 977 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 ABCF2Q9UG63 623 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 MLKLQ8NB16 471 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 EPSTI1Q96J88 318 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 RAI14Q9P0K7 980 aa19.52■□□□□ 0.72
VPS53-215ENST00000573028 SOWAHDA6NJG2 315 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 EFCAB8A8MWE9 144 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 PDE8AO60658 829 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 SLC5A1P13866 664 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 SDR42E1Q8WUS8 393 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 SRRTQ9BXP5 876 aaKnown RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 CNNM2Q9H8M5 875 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 ZCCHC17Q9NP64 241 aaKnown RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 DACH1Q9UI36 760 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 PKD1L3Q7Z443 1732 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 NUTM2AQ8IVF1 878 aaPredicted RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 MED15Q96RN5 788 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 CARD10Q9BWT7 1032 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms