RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SSC5DA1L4H1 1573 aa9.91□□□□□ -0.82
VPS53-214ENST00000572607 RPAP1Q9BWH6 1393 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 MROH7-TTC4A0A0A0MT08 1334 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 GAKO14976 1311 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 MANSC4A6NHS7 340 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 APBB1O00213 710 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 RAB11FIP3O75154 756 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 USP2O75604 605 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 ZBTB48P10074 688 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 MCAMP43121 646 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 BTDP43251 543 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 SPRYD7Q5W111 196 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 CDC42EP5Q6NZY7 148 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 AACSQ86V21 672 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 CLASRPQ8N2M8 674 aaKnown RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 KIF1BPQ96EK5 621 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 ZNF512BQ96KM6 892 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 TEPSINQ96N21 525 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 CCDC8Q9H0W5 538 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 CSADQ9Y600 493 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.9□□□□□ -0.82
VPS53-214ENST00000572607 ECM29Q5VYK3 1845 aa9.9□□□□□ -0.82
VPS53-214ENST00000572607 MYH13Q9UKX3 1938 aa9.9□□□□□ -0.83
VPS53-214ENST00000572607 IGSF3O75054 1194 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 MAP4K4O95819 1239 aaPredicted RBP9.89□□□□□ -0.83
VPS53-214ENST00000572607 IFIT2P09913 472 aaKnown RBP9.89□□□□□ -0.83
VPS53-214ENST00000572607 INHBEP58166 350 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 MAP3K9P80192 1104 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 MECOMQ03112 1051 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 TCP10Q12799 353 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 C20orf194Q5TEA3 1177 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 PI16Q6UXB8 463 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 TBC1D9Q6ZT07 1266 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 RHPN1Q8TCX5 695 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 EAF2Q96CJ1 260 aaPredicted RBP9.89□□□□□ -0.83
VPS53-214ENST00000572607 WNK4Q96J92 1243 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 ZNF341Q9BYN7 854 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 BCL11AQ9H165 835 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 R3HDMLQ9H3Y0 253 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 ELP3Q9H9T3 547 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 SNRKQ9NRH2 765 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 PLA2G2EQ9NZK7 142 aa9.89□□□□□ -0.83
VPS53-214ENST00000572607 DBNLQ9UJU6 430 aaKnown RBP9.89□□□□□ -0.83
VPS53-214ENST00000572607 ENTPD3O75355 529 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 BAG3O95817 575 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 ALDH1A1P00352 501 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 RGS3P49796 1198 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 NFIAQ12857 509 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 PICALMQ13492 652 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 OTUD7BQ6GQQ9 843 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 NAA16Q6N069 864 aaPredicted RBP9.88□□□□□ -0.83
VPS53-214ENST00000572607 ZSCAN29Q8IWY8 852 aaPredicted RBP9.88□□□□□ -0.83
VPS53-214ENST00000572607 ZNF296Q8WUU4 475 aaPredicted RBP9.88□□□□□ -0.83
VPS53-214ENST00000572607 NSUN4Q96CB9 384 aaKnown RBP9.88□□□□□ -0.83
VPS53-214ENST00000572607 CLMNQ96JQ2 1002 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 WRNIP1Q96S55 665 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 IL1RAPL2Q9NP60 686 aa9.88□□□□□ -0.83
VPS53-214ENST00000572607 GPR75-ASB3A0A0A6YYF3 556 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 PDE4AP27815 886 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 TM4SF4P48230 202 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 RRP1P56182 461 aaKnown RBP9.87□□□□□ -0.83
VPS53-214ENST00000572607 VGLL4Q14135 290 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 PPP1R15BQ5SWA1 713 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS53-214ENST00000572607 OPTNQ96CV9 577 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 IDI2Q9BXS1 227 aa9.87□□□□□ -0.83
VPS53-214ENST00000572607 TLR7Q9NYK1 1049 aaKnown RBP9.87□□□□□ -0.83
VPS53-214ENST00000572607 WDHD1O75717 1129 aaPredicted RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 IDH1O75874 414 aaKnown RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 TBC1D8O95759 1140 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 CYP2E1P05181 493 aaPredicted RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 ZAP70P43403 619 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 MAP3K12Q12852 859 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 TTF1Q15361 905 aaPredicted RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 NOM1Q5C9Z4 860 aaKnown RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 MIGA2Q7L4E1 593 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 TEX11Q8IYF3 940 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 KCNK17Q96T54 332 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 LRRCC1Q9C099 1032 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 FAM198AQ9UFP1 575 aa9.86□□□□□ -0.83
VPS53-214ENST00000572607 KIAA0100Q14667 2235 aaKnown RBP9.86□□□□□ -0.83
VPS53-214ENST00000572607 SZT2Q5T011 3432 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 SPDYE5A6NIY4 337 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 GTF2A2P52657 109 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 TMED8Q6PL24 325 aaPredicted RBP9.85□□□□□ -0.83
VPS53-214ENST00000572607 ERO1BQ86YB8 467 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 CERS3Q8IU89 383 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 SIRT2Q8IXJ6 389 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 CFHR5Q9BXR6 569 aa9.85□□□□□ -0.83
VPS53-214ENST00000572607 AATFQ9NY61 560 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS53-214ENST00000572607 OTOFQ9HC10 1997 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 CCL15-CCL14A0A0B4J2E2 113 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 GPR25O00155 361 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 CYP7A1P22680 504 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 RHBDL3P58872 404 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 CAP1Q01518 475 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 PPATQ06203 517 aa9.84□□□□□ -0.83
VPS53-214ENST00000572607 PKN2Q16513 984 aaKnown RBP9.84□□□□□ -0.83
VPS53-214ENST00000572607 CCL15Q16663 113 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms