RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SWAP70Q9UH65 585 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 HACL1Q9UJ83 578 aa15.15■□□□□ 0.02
CLK3-214ENST00000564096 CYP2D7A0A087X1C5 515 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 SHTN1A0MZ66 631 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 TCP10L2B9ZVM9 353 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 CYP2D6P10635 497 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 TCP10Q12799 353 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 SART3Q15020 963 aaKnown RBP15.14■□□□□ 0.01
CLK3-214ENST00000564096 SLC4A8Q2Y0W8 1093 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 RRP12Q5JTH9 1297 aaKnown RBP15.14■□□□□ 0.01
CLK3-214ENST00000564096 DHX32Q7L7V1 743 aaKnown RBP15.14■□□□□ 0.01
CLK3-214ENST00000564096 CRACR2BQ8N4Y2 399 aaPredicted RBP15.14■□□□□ 0.01
CLK3-214ENST00000564096 FAM151AQ8WW52 585 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 NBPF3Q9H094 633 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 FAM198AQ9UFP1 575 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 SERPINB13Q9UIV8 391 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 TAF6LQ9Y6J9 622 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 CDK5RAP2Q96SN8 1893 aa15.14■□□□□ 0.01
CLK3-214ENST00000564096 ORC4O43929 436 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 NBPF9Q3BBW0 867 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 C16orf86Q6ZW13 317 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 MB21D2Q8IYB1 491 aaPredicted RBP15.13■□□□□ 0.01
CLK3-214ENST00000564096 SNX21Q969T3 373 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 MKNK2Q9HBH9 465 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 RNF216Q9NWF9 866 aaPredicted RBP15.13■□□□□ 0.01
CLK3-214ENST00000564096 PI4KBQ9UBF8 816 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 PPP2R3BQ9Y5P8 575 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 PITPNM2Q9BZ72 1349 aa15.13■□□□□ 0.01
CLK3-214ENST00000564096 BAZ2AQ9UIF9 1905 aaKnown RBP15.12■□□□□ 0.01
CLK3-214ENST00000564096 ERICH2A1L162 156 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 EPS15P42566 896 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 USP50Q70EL3 339 aaPredicted RBP15.12■□□□□ 0.01
CLK3-214ENST00000564096 TRPM4Q8TD43 1214 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 HOOK2Q96ED9 719 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 CSRNP1Q96S65 589 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 UBAC1Q9BSL1 405 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 MTA3Q9BTC8 594 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 GGA3Q9NZ52 723 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLK3-214ENST00000564096 WDR90Q96KV7 1748 aa15.12■□□□□ 0.01
CLK3-214ENST00000564096 B4E1Z4 1266 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 PRC1O43663 620 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 RANBP6O60518 1105 aaKnown RBP15.11■□□□□ 0.01
CLK3-214ENST00000564096 KDM4AO75164 1064 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 EGFRP00533 1210 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 FGRP09769 529 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 IQCA1Q86XH1 822 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 STK11IPQ8N1F8 1099 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 TMEM87BQ96K49 555 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 HERC5Q9UII4 1024 aaKnown RBP15.11■□□□□ 0.01
CLK3-214ENST00000564096 CNTNAP1P78357 1384 aa15.11■□□□□ 0.01
CLK3-214ENST00000564096 MYH1P12882 1939 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 TSPY2A6NKD2 308 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 PRDM1O75626 825 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 EPHX2P34913 555 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 PLCD1P51178 756 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 CCDC178Q5BJE1 867 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 ANGEL2Q5VTE6 544 aaKnown RBP15.1■□□□□ 0.01
CLK3-214ENST00000564096 PNMA8AQ86V59 439 aaPredicted RBP15.1■□□□□ 0.01
CLK3-214ENST00000564096 FOXP4Q8IVH2 680 aaPredicted RBP15.1■□□□□ 0.01
CLK3-214ENST00000564096 ZNF444Q8N0Y2 327 aaPredicted RBP15.1■□□□□ 0.01
CLK3-214ENST00000564096 DYNLL2Q96FJ2 89 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 TTC14Q96N46 770 aa15.1■□□□□ 0.01
CLK3-214ENST00000564096 ALDH8A1Q9H2A2 487 aaPredicted RBP15.1■□□□□ 0.01
CLK3-214ENST00000564096 SCN4AP35499 1836 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 DDTLA6NHG4 134 aaPredicted RBP15.09■□□□□ 0.01
CLK3-214ENST00000564096 K7ELQ4 463 aaPredicted RBP15.09■□□□□ 0.01
CLK3-214ENST00000564096 TSPY3P0CV98 308 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 TSPY8P0CW00 308 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 CPA1P15085 419 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 CDK8P49336 464 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 AK2P54819 239 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 GABPAQ06546 454 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 RASA3Q14644 834 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 PPP4R3BQ5MIZ7 849 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 DCPSQ96C86 337 aaKnown RBP15.09■□□□□ 0.01
CLK3-214ENST00000564096 PLIN4Q96Q06 1357 aa15.09■□□□□ 0.01
CLK3-214ENST00000564096 EXOSC10Q01780 885 aaKnown RBP15.08■□□□□ 0
CLK3-214ENST00000564096 Q6ZUG5 572 aa15.08■□□□□ 0
CLK3-214ENST00000564096 SULF1Q8IWU6 871 aa15.08■□□□□ 0
CLK3-214ENST00000564096 FBXL16Q8N461 479 aa15.08■□□□□ 0
CLK3-214ENST00000564096 ZC3H15Q8WU90 426 aaKnown RBP15.08■□□□□ 0
CLK3-214ENST00000564096 TCEANC2Q96MN5 208 aa15.08■□□□□ 0
CLK3-214ENST00000564096 TMEM39BQ9GZU3 492 aa15.08■□□□□ 0
CLK3-214ENST00000564096 SH2B1Q9NRF2 756 aaPredicted RBP15.08■□□□□ 0
CLK3-214ENST00000564096 ANGEL1Q9UNK9 670 aaKnown RBP15.08■□□□□ 0
CLK3-214ENST00000564096 SH2B2O14492 632 aaPredicted RBP15.07■□□□□ 0
CLK3-214ENST00000564096 IFIT3O14879 490 aaKnown RBP15.07■□□□□ 0
CLK3-214ENST00000564096 HSP90AA1P07900 732 aaKnown RBP15.07■□□□□ 0
CLK3-214ENST00000564096 RASA1P20936 1047 aa15.07■□□□□ 0
CLK3-214ENST00000564096 ANTXR2P58335 489 aa15.07■□□□□ 0
CLK3-214ENST00000564096 TMEM67Q5HYA8 995 aa15.07■□□□□ 0
CLK3-214ENST00000564096 DCAF15Q66K64 600 aa15.07■□□□□ 0
CLK3-214ENST00000564096 NOL8Q76FK4 1167 aaKnown RBP15.07■□□□□ 0
CLK3-214ENST00000564096 SH3BP5LQ7L8J4 393 aa15.07■□□□□ 0
CLK3-214ENST00000564096 ZFPM1Q8IX07 1006 aa15.07■□□□□ 0
CLK3-214ENST00000564096 SLC44A5Q8NCS7 719 aa15.07■□□□□ 0
CLK3-214ENST00000564096 BRF1Q92994 677 aa15.07■□□□□ 0
CLK3-214ENST00000564096 CHMP4CQ96CF2 233 aa15.07■□□□□ 0
CLK3-214ENST00000564096 ZSCAN31Q96LW9 406 aaPredicted RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms