RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GBP4Q96PP9 640 aa10.56□□□□□ -0.72
VPS39-207ENST00000563692 STRBPQ96SI9 672 aaKnown RBP10.56□□□□□ -0.72
VPS39-207ENST00000563692 ARAP2Q8WZ64 1704 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 COL1A1P02452 1464 aaPredicted RBP10.55□□□□□ -0.72
VPS39-207ENST00000563692 FAM155AB1AL88 458 aaPredicted RBP10.55□□□□□ -0.72
VPS39-207ENST00000563692 E7EWF7 191 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 PTMSP20962 102 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 CRKP46108 304 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 PRKG1Q13976 671 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 NAA16Q6N069 864 aaPredicted RBP10.55□□□□□ -0.72
VPS39-207ENST00000563692 RASAL3Q86YV0 1011 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 TEKT1Q969V4 418 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 PRMT6Q96LA8 375 aaPredicted RBP10.55□□□□□ -0.72
VPS39-207ENST00000563692 TMOD2Q9NZR1 351 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 TSKSQ9UJT2 592 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 ANGEL1Q9UNK9 670 aaKnown RBP10.55□□□□□ -0.72
VPS39-207ENST00000563692 SUGT1Q9Y2Z0 365 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 THSD7BQ9C0I4 1608 aa10.55□□□□□ -0.72
VPS39-207ENST00000563692 PAPPA2Q9BXP8 1791 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 POLR2AP24928 1970 aaKnown RBP10.54□□□□□ -0.72
VPS39-207ENST00000563692 MAGEB6P1A0A0J9YX57 407 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 CPA1P15085 419 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 TNNI2P48788 182 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 GSTO1P78417 241 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 HDLBPQ00341 1268 aaKnown RBP10.54□□□□□ -0.72
VPS39-207ENST00000563692 RAB3GAP1Q15042 981 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 MOB2Q70IA6 237 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 IFNL3Q8IZI9 196 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 NCOA7Q8NI08 942 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 NAPBQ9H115 298 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 SAGE1Q9NXZ1 904 aa10.54□□□□□ -0.72
VPS39-207ENST00000563692 GOLGA6L22H0YM25 854 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 MBD4O95243 580 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 LDHCP07864 332 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 MCM5P33992 734 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 IREB2P48200 963 aaKnown RBP10.53□□□□□ -0.72
VPS39-207ENST00000563692 RASA3Q14644 834 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 SPDYE2Q495Y8 402 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 Q6ZUG5 572 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 RALYLQ86SE5 291 aaKnown RBP10.53□□□□□ -0.72
VPS39-207ENST00000563692 ZIC5Q96T25 663 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 TDRD3Q9H7E2 651 aaKnown RBP10.53□□□□□ -0.72
VPS39-207ENST00000563692 ARMT1Q9H993 441 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 ZNF70Q9UC06 446 aaPredicted RBP10.53□□□□□ -0.72
VPS39-207ENST00000563692 SMC3Q9UQE7 1217 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 PCDHAC2Q9Y5I4 1007 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 SLC4A4Q9Y6R1 1079 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 ZMYM6O95789 1325 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 SALL1Q9NSC2 1324 aa10.53□□□□□ -0.72
VPS39-207ENST00000563692 TRPA1O75762 1119 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 LDHBP07195 334 aaKnown RBP10.52□□□□□ -0.73
VPS39-207ENST00000563692 TDO2P48775 406 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 EXOSC10Q01780 885 aaKnown RBP10.52□□□□□ -0.73
VPS39-207ENST00000563692 SREBF2Q12772 1141 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 DZIP1Q86YF9 867 aaKnown RBP10.52□□□□□ -0.73
VPS39-207ENST00000563692 CERS3Q8IU89 383 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 SLF2Q8IX21 1173 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 FBXL16Q8N461 479 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 TNPO1Q92973 898 aaKnown RBP10.52□□□□□ -0.73
VPS39-207ENST00000563692 SLC10A4Q96EP9 437 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 NOL10Q9BSC4 688 aaKnown RBP10.52□□□□□ -0.73
VPS39-207ENST00000563692 MRIQ9BWK5 157 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 AKAP11Q9UKA4 1901 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 A0A1B0GUL6 1792 aa10.52□□□□□ -0.73
VPS39-207ENST00000563692 UNCXA6NJT0 531 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 DDX11L8A8MPP1 907 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 TCP10L2B9ZVM9 353 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 BAG3O95817 575 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 MCM4P33991 863 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 HAND2P61296 217 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 MECOMQ03112 1051 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 MKRN3Q13064 507 aaKnown RBP10.51□□□□□ -0.73
VPS39-207ENST00000563692 ME3Q16798 604 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 GIMAP6Q6P9H5 292 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 STOX1Q6ZVD7 989 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 LCORLQ8N3X6 602 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 NSUN4Q96CB9 384 aaKnown RBP10.51□□□□□ -0.73
VPS39-207ENST00000563692 HOOK2Q96ED9 719 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 ZDHHC15Q96MV8 337 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 CSRNP1Q96S65 589 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 LARP6Q9BRS8 491 aaKnown RBP10.51□□□□□ -0.73
VPS39-207ENST00000563692 RNF41Q9H4P4 317 aaPredicted RBP10.51□□□□□ -0.73
VPS39-207ENST00000563692 CNNM2Q9H8M5 875 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 RNF186Q9NXI6 227 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.51□□□□□ -0.73
VPS39-207ENST00000563692 TPCN1Q9ULQ1 816 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 TAF6LQ9Y6J9 622 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 WDR19Q8NEZ3 1342 aa10.51□□□□□ -0.73
VPS39-207ENST00000563692 GSG1L2A8MUP6 293 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 FOXP2O15409 715 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 PDCP20941 246 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 TOB2Q14106 344 aaPredicted RBP10.5□□□□□ -0.73
VPS39-207ENST00000563692 MAP3K11Q16584 847 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 LDLRAD1Q5T700 205 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 NBPF12Q5TAG4 269 aaPredicted RBP10.5□□□□□ -0.73
VPS39-207ENST00000563692 HHIPL2Q6UWX4 724 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 MFSD6Q6ZSS7 791 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 CCDC83Q8IWF9 413 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 MIGA1Q8NAN2 632 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 ZNF274Q96GC6 653 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms