RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 NDUFB9Q9Y6M9 179 aa20.5■□□□□ 0.87
CLK3-210ENST00000563112 FAM196BA6NMK8 535 aa20.49■□□□□ 0.87
CLK3-210ENST00000563112 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.49■□□□□ 0.87
CLK3-210ENST00000563112 ANTXR1Q9H6X2 564 aa20.49■□□□□ 0.87
CLK3-210ENST00000563112 DOCK1Q14185 1865 aa20.49■□□□□ 0.87
CLK3-210ENST00000563112 A0A0G2JLL6 359 aaPredicted RBP20.48■□□□□ 0.87
CLK3-210ENST00000563112 DYNLL1P63167 89 aaKnown RBP20.48■□□□□ 0.87
CLK3-210ENST00000563112 GADL1Q6ZQY3 521 aa20.48■□□□□ 0.87
CLK3-210ENST00000563112 PRRT2Q7Z6L0 340 aaPredicted RBP20.48■□□□□ 0.87
CLK3-210ENST00000563112 FOXP4Q8IVH2 680 aaPredicted RBP20.48■□□□□ 0.87
CLK3-210ENST00000563112 PARK7Q99497 189 aaKnown RBP20.48■□□□□ 0.87
CLK3-210ENST00000563112 FLT1P17948 1338 aa20.48■□□□□ 0.87
CLK3-210ENST00000563112 HLA-DOAP06340 250 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 CAP2P40123 477 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 USP5P45974 858 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 MOGSQ13724 837 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 CRACR2BQ8N4Y2 399 aaPredicted RBP20.47■□□□□ 0.87
CLK3-210ENST00000563112 MIGA1Q8NAN2 632 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 TBC1D2Q9BYX2 928 aa20.47■□□□□ 0.87
CLK3-210ENST00000563112 TRIM75PA6NK02 468 aa20.46■□□□□ 0.87
CLK3-210ENST00000563112 C17orf99Q6UX52 265 aa20.46■□□□□ 0.87
CLK3-210ENST00000563112 DNAJC2Q99543 621 aaKnown RBP20.46■□□□□ 0.87
CLK3-210ENST00000563112 LRRCC1Q9C099 1032 aa20.46■□□□□ 0.87
CLK3-210ENST00000563112 CPA4Q9UI42 421 aa20.46■□□□□ 0.87
CLK3-210ENST00000563112 PALD1Q9ULE6 856 aa20.46■□□□□ 0.87
CLK3-210ENST00000563112 GNRH1P01148 92 aa20.45■□□□□ 0.86
CLK3-210ENST00000563112 LACTBP83111 547 aaPredicted RBP20.45■□□□□ 0.86
CLK3-210ENST00000563112 GPAT2Q6NUI2 795 aa20.45■□□□□ 0.86
CLK3-210ENST00000563112 AS3MTQ9HBK9 375 aa20.45■□□□□ 0.86
CLK3-210ENST00000563112 SAP30BPQ9UHR5 308 aaKnown RBP20.45■□□□□ 0.86
CLK3-210ENST00000563112 CDK5RAP2Q96SN8 1893 aa20.44■□□□□ 0.86
CLK3-210ENST00000563112 USP17L5A8MUK1 530 aa20.44■□□□□ 0.86
CLK3-210ENST00000563112 GOLIM4O00461 696 aa20.44■□□□□ 0.86
CLK3-210ENST00000563112 SLC9C2Q5TAH2 1124 aa20.44■□□□□ 0.86
CLK3-210ENST00000563112 CCDC84Q86UT8 332 aaPredicted RBP20.44■□□□□ 0.86
CLK3-210ENST00000563112 SLC45A1Q9Y2W3 748 aa20.44■□□□□ 0.86
CLK3-210ENST00000563112 FOCADQ5VW36 1801 aa20.43■□□□□ 0.86
CLK3-210ENST00000563112 SPP2Q13103 211 aa20.43■□□□□ 0.86
CLK3-210ENST00000563112 ZNF280CQ8ND82 737 aa20.43■□□□□ 0.86
CLK3-210ENST00000563112 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.43■□□□□ 0.86
CLK3-210ENST00000563112 MAGEB6P1A0A0J9YX57 407 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 ASNSP08243 561 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 CYP2C8P10632 490 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 PDE6AP16499 860 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 ATP5JP18859 108 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 HOXD10P28358 340 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 PRMT2P55345 433 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 CAP1Q01518 475 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 TTC6Q86TZ1 520 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 METTL16Q86W50 562 aaKnown RBP20.42■□□□□ 0.86
CLK3-210ENST00000563112 BOLA2Q9H3K6 86 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 GINM1Q9NU53 330 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 PAG1Q9NWQ8 432 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 ADGRA2Q96PE1 1338 aa20.42■□□□□ 0.86
CLK3-210ENST00000563112 PHIPQ8WWQ0 1821 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 FMNL1O95466 1100 aaPredicted RBP20.41■□□□□ 0.86
CLK3-210ENST00000563112 PSMC4P43686 418 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 RRP1BQ14684 758 aaKnown RBP20.41■□□□□ 0.86
CLK3-210ENST00000563112 NBPF11Q86T75 865 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 PROCA1Q8NCQ7 364 aaPredicted RBP20.41■□□□□ 0.86
CLK3-210ENST00000563112 CRNKL1Q9BZJ0 848 aaKnown RBP20.41■□□□□ 0.86
CLK3-210ENST00000563112 ARHGAP39Q9C0H5 1083 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 PNMA3Q9UL41 463 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 AGTPBP1Q9UPW5 1226 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 ATAD5Q96QE3 1844 aa20.41■□□□□ 0.86
CLK3-210ENST00000563112 PTPRFP10586 1907 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 MYH1P12882 1939 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 PABPC4Q13310 644 aaKnown RBP eCLIP20.4■□□□□ 0.86
CLK3-210ENST00000563112 SLC4A8Q2Y0W8 1093 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 SLC9C1Q4G0N8 1177 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 SMCR8Q8TEV9 937 aaPredicted RBP20.4■□□□□ 0.86
CLK3-210ENST00000563112 ARMC5Q96C12 935 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 RIOK1Q9BRS2 568 aaKnown RBP20.4■□□□□ 0.86
CLK3-210ENST00000563112 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.4■□□□□ 0.861e-6■■□□□ 12.8
CLK3-210ENST00000563112 ZNF532Q9HCE3 1301 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 PTCH2Q9Y6C5 1203 aa20.4■□□□□ 0.86
CLK3-210ENST00000563112 SMARCA5O60264 1052 aaPredicted RBP20.39■□□□□ 0.85
CLK3-210ENST00000563112 ECM2O94769 699 aaPredicted RBP20.39■□□□□ 0.85
CLK3-210ENST00000563112 BCRP11274 1271 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 HAUS7Q99871 368 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 WDR18Q9BV38 432 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 DCTPP1Q9H773 170 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 DNAJC18Q9H819 358 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 SIPA1L1O43166 1804 aa20.39■□□□□ 0.85
CLK3-210ENST00000563112 HMGCS2P54868 508 aa20.38■□□□□ 0.85
CLK3-210ENST00000563112 EDC3Q96F86 508 aaKnown RBP20.38■□□□□ 0.85
CLK3-210ENST00000563112 YTHDC1Q96MU7 727 aaKnown RBP20.38■□□□□ 0.85
CLK3-210ENST00000563112 TMEM106CQ9BVX2 250 aa20.38■□□□□ 0.85
CLK3-210ENST00000563112 EHD4Q9H223 541 aa20.38■□□□□ 0.85
CLK3-210ENST00000563112 TMOD4Q9NZQ9 345 aa20.38■□□□□ 0.85
CLK3-210ENST00000563112 SERPINB13Q9UIV8 391 aa20.38■□□□□ 0.85
CLK3-210ENST00000563112 GDF11O95390 407 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 POLR3DP05423 398 aaPredicted RBP20.37■□□□□ 0.85
CLK3-210ENST00000563112 OSBPP22059 807 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 FCGRTP55899 365 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 RRP1P56182 461 aaKnown RBP20.37■□□□□ 0.85
CLK3-210ENST00000563112 SH3D19Q5HYK7 790 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 TREML2Q5T2D2 321 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 GPATCH3Q96I76 525 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 TRIM47Q96LD4 638 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 196.5 ms