RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 CCDC8Q9H0W5 538 aaPredicted RBP17.15■□□□□ 0.34
TPM1-223ENST00000560445 IFIT2P09913 472 aaKnown RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 C17orf99Q6UX52 265 aa17.14■□□□□ 0.33
TPM1-223ENST00000560445 GADL1Q6ZQY3 521 aa17.14■□□□□ 0.33
TPM1-223ENST00000560445 FOXP4Q8IVH2 680 aaPredicted RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 CRACR2BQ8N4Y2 399 aaPredicted RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 RHPN1Q8TCX5 695 aa17.14■□□□□ 0.33
TPM1-223ENST00000560445 SH3RF3Q8TEJ3 882 aaPredicted RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 SMCR8Q8TEV9 937 aaPredicted RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 EAF2Q96CJ1 260 aaPredicted RBP17.14■□□□□ 0.33
TPM1-223ENST00000560445 AFG3L2Q9Y4W6 797 aa17.14■□□□□ 0.33
TPM1-223ENST00000560445 RBBP6Q7Z6E9 1792 aaKnown RBP17.13■□□□□ 0.33
TPM1-223ENST00000560445 ASNSP08243 561 aa17.13■□□□□ 0.33
TPM1-223ENST00000560445 CYP7A1P22680 504 aa17.13■□□□□ 0.33
TPM1-223ENST00000560445 FCGRTP55899 365 aa17.13■□□□□ 0.33
TPM1-223ENST00000560445 PROCA1Q8NCQ7 364 aaPredicted RBP17.13■□□□□ 0.33
TPM1-223ENST00000560445 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.13■□□□□ 0.33
TPM1-223ENST00000560445 ZBTB40Q9NUA8 1239 aa17.13■□□□□ 0.33
TPM1-223ENST00000560445 FOCADQ5VW36 1801 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 TRIM75PA6NK02 468 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 USP17L5A8MUK1 530 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 CAP2P40123 477 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 ZNF280CQ8ND82 737 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 TLR7Q9NYK1 1049 aaKnown RBP17.12■□□□□ 0.33
TPM1-223ENST00000560445 AGTPBP1Q9UPW5 1226 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 COG6Q9Y2V7 657 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 FLT1P17948 1338 aa17.12■□□□□ 0.33
TPM1-223ENST00000560445 FMNL1O95466 1100 aaPredicted RBP17.11■□□□□ 0.33
TPM1-223ENST00000560445 USP5P45974 858 aa17.11■□□□□ 0.33
TPM1-223ENST00000560445 TGFBRAP1Q8WUH2 860 aa17.11■□□□□ 0.33
TPM1-223ENST00000560445 PIH1D3Q9NQM4 214 aaKnown RBP17.11■□□□□ 0.33
TPM1-223ENST00000560445 CPA4Q9UI42 421 aa17.11■□□□□ 0.33
TPM1-223ENST00000560445 ATAD5Q96QE3 1844 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 PTPRFP10586 1907 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 OSBPP22059 807 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 PSMC4P43686 418 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 MOGSQ13724 837 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 GPAT2Q6NUI2 795 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 TTC6Q86TZ1 520 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 MAPKAPK5Q8IW41 473 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 MAGEB6Q8N7X4 407 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 RAET1EQ8TD07 263 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 ZNF333Q96JL9 665 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 TAOK2Q9UL54 1235 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 PTCH2Q9Y6C5 1203 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 ADGRA2Q96PE1 1338 aa17.1■□□□□ 0.33
TPM1-223ENST00000560445 GCLCP48506 637 aaPredicted RBP17.09■□□□□ 0.33
TPM1-223ENST00000560445 SLC4A8Q2Y0W8 1093 aa17.09■□□□□ 0.33
TPM1-223ENST00000560445 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.09■□□□□ 0.33
TPM1-223ENST00000560445 IL1RAPL2Q9NP60 686 aa17.09■□□□□ 0.33
TPM1-223ENST00000560445 TMOD4Q9NZQ9 345 aa17.09■□□□□ 0.33
TPM1-223ENST00000560445 SRRDQ9UH36 339 aa17.09■□□□□ 0.33
TPM1-223ENST00000560445 PHIPQ8WWQ0 1821 aa17.08■□□□□ 0.33
TPM1-223ENST00000560445 MYPNQ86TC9 1320 aa17.08■□□□□ 0.32
TPM1-223ENST00000560445 BCRP11274 1271 aa17.08■□□□□ 0.32
TPM1-223ENST00000560445 SPP2Q13103 211 aa17.08■□□□□ 0.32
TPM1-223ENST00000560445 PRPF38BQ5VTL8 546 aaKnown RBP17.08■□□□□ 0.32
TPM1-223ENST00000560445 METTL16Q86W50 562 aaKnown RBP17.08■□□□□ 0.32
TPM1-223ENST00000560445 TRIM47Q96LD4 638 aa17.08■□□□□ 0.32
TPM1-223ENST00000560445 WDR18Q9BV38 432 aa17.08■□□□□ 0.32
TPM1-223ENST00000560445 CRNKL1Q9BZJ0 848 aaKnown RBP17.08■□□□□ 0.32
TPM1-223ENST00000560445 KIAA0100Q14667 2235 aaKnown RBP17.08■□□□□ 0.32
TPM1-223ENST00000560445 CDK5RAP2Q96SN8 1893 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 LOC285556D6RIA3 1793 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 C19orf81C9J6K1 198 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 APBB1O00213 710 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 CYP2C8P10632 490 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 CAPN2P17655 700 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 UBXN2AP68543 259 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 FAM110CQ1W6H9 321 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 ADGRA1Q86SQ6 560 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 NKX2-3Q8TAU0 364 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 GTF3C2Q8WUA4 911 aaPredicted RBP17.07■□□□□ 0.32
TPM1-223ENST00000560445 EHD4Q9H223 541 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 SERPINB13Q9UIV8 391 aa17.07■□□□□ 0.32
TPM1-223ENST00000560445 MYO5AQ9Y4I1 1855 aaKnown RBP17.06■□□□□ 0.32
TPM1-223ENST00000560445 MAGEB6P1A0A0J9YX57 407 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 FAM196BA6NMK8 535 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 SH3D19Q5HYK7 790 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 SLC9C2Q5TAH2 1124 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 AMOTL1Q8IY63 956 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 MIGA1Q8NAN2 632 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 SLAIN1Q8ND83 568 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 COA7Q96BR5 231 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 DDRGK1Q96HY6 314 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 GPATCH3Q96I76 525 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 LRRCC1Q9C099 1032 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 PALD1Q9ULE6 856 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 MYH1P12882 1939 aa17.06■□□□□ 0.32
TPM1-223ENST00000560445 GRK4P32298 578 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 HMGCS2P54868 508 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 BACE1P56817 501 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 IRX3P78415 501 aaPredicted RBP17.05■□□□□ 0.32
TPM1-223ENST00000560445 ZSCAN25Q6NSZ9 544 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 DNAJC2Q99543 621 aaKnown RBP17.05■□□□□ 0.32
TPM1-223ENST00000560445 ARHGAP39Q9C0H5 1083 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
TPM1-223ENST00000560445 HTTP42858 3142 aa17.04■□□□□ 0.32
TPM1-223ENST00000560445 USP17L10C9JJH3 530 aa17.04■□□□□ 0.32
TPM1-223ENST00000560445 GOLIM4O00461 696 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms