RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ACBD3Q9H3P7 528 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 SNRKQ9NRH2 765 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 IFNKQ9P0W0 207 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 VPS18Q9P253 973 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 QSER1Q2KHR3 1735 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 ARHGAP6O43182 974 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 BAG6P46379 1132 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 GNL2Q13823 731 aaKnown RBP12.47□□□□□ -0.41
USP3-206ENST00000558157 LRRC24Q50LG9 513 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 CREB3L3Q68CJ9 461 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 BLOC1S2Q6QNY1 142 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 ATG9AQ7Z3C6 839 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 DEFB132Q7Z7B7 95 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 COL23A1Q86Y22 540 aaPredicted RBP12.47□□□□□ -0.41
USP3-206ENST00000558157 GPATCH11Q8N954 259 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 PUS3Q9BZE2 481 aaKnown RBP12.47□□□□□ -0.41
USP3-206ENST00000558157 GBP3Q9H0R5 595 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 RAB21Q9UL25 225 aa12.47□□□□□ -0.41
USP3-206ENST00000558157 COL4A1P02462 1669 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 PNPLA7Q6ZV29 1317 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 ANKRD18BA2A2Z9 1011 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 EYA2O00167 538 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 IKBKBO14920 756 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 PTH1RQ03431 593 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 TFCP2Q12800 502 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 TRDNQ13061 729 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 DNAJC21Q5F1R6 531 aaKnown RBP12.46□□□□□ -0.41
USP3-206ENST00000558157 C3orf67Q6ZVT6 689 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 CLASRPQ8N2M8 674 aaKnown RBP12.46□□□□□ -0.41
USP3-206ENST00000558157 CCDC24Q8N4L8 307 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 ANKRD20A12PQ8NF67 263 aa12.46□□□□□ -0.41
USP3-206ENST00000558157 HSP90B1P14625 803 aaKnown RBP12.46□□□□□ -0.42
USP3-206ENST00000558157 MAP2K2P36507 400 aa12.46□□□□□ -0.42
USP3-206ENST00000558157 HSP90B2PQ58FF3 399 aa12.46□□□□□ -0.42
USP3-206ENST00000558157 BEND6Q5SZJ8 279 aaPredicted RBP12.46□□□□□ -0.42
USP3-206ENST00000558157 NAA16Q6N069 864 aaPredicted RBP12.46□□□□□ -0.42
USP3-206ENST00000558157 AACSQ86V21 672 aa12.46□□□□□ -0.42
USP3-206ENST00000558157 MAP4K1Q92918 833 aa12.46□□□□□ -0.42
USP3-206ENST00000558157 ZNF396Q96N95 335 aaPredicted RBP12.46□□□□□ -0.42
USP3-206ENST00000558157 HMG20BQ9P0W2 317 aa12.46□□□□□ -0.42
USP3-206ENST00000558157 RIC1Q4ADV7 1423 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 H3BQV1 296 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 CIAO1O76071 339 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 RPS6KB1P23443 525 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 IFFO2Q5TF58 517 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 VWA3AA6NCI4 1184 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 IL15P40933 162 aaPredicted RBP12.45□□□□□ -0.42
USP3-206ENST00000558157 CCDC152Q4G0S7 254 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 MSANTD4Q8NCY6 345 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 EAF2Q96CJ1 260 aaPredicted RBP12.45□□□□□ -0.42
USP3-206ENST00000558157 LLPHQ9BRT6 129 aaKnown RBP12.45□□□□□ -0.42
USP3-206ENST00000558157 PDE11AQ9HCR9 933 aa12.45□□□□□ -0.42
USP3-206ENST00000558157 TLR7Q9NYK1 1049 aaKnown RBP12.45□□□□□ -0.42
USP3-206ENST00000558157 RBM8AQ9Y5S9 174 aaKnown RBP12.45□□□□□ -0.42
USP3-206ENST00000558157 RTL9Q8NET4 1388 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 FANCGO15287 622 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
USP3-206ENST00000558157 LRRC31Q6UY01 552 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 TPTE2Q6XPS3 522 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 FLAD1Q8NFF5 587 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 SEC31BQ9NQW1 1179 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 ZNF609O15014 1411 aa12.44□□□□□ -0.42
USP3-206ENST00000558157 TAF1P21675 1872 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 A0A1W2PQ27 194 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 A0A1W2PQ64 194 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 A0A1W2PQD8 194 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 MAP4K4O95819 1239 aaPredicted RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 IFIT2P09913 472 aaKnown RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 ADD1P35611 737 aaKnown RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 DDR1Q08345 913 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 SLC15A2Q16348 729 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 TNNI3KQ59H18 835 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 SLC10A5Q5PT55 438 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 CEP112Q8N8E3 955 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 CNBD1Q8NA66 436 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 EVI5LQ96CN4 794 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 GPATCH3Q96I76 525 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 CCDC8Q9H0W5 538 aaPredicted RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 GOLPH3LQ9H4A5 285 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 STK32BQ9NY57 414 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 KIAA1468Q9P260 1216 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 L1RE1Q9UN81 338 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 PPP2R2CQ9Y2T4 447 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 FPGT-TNNI3KV9GXZ4 949 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 SLC27A2O14975 620 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 TM4SF1P30408 202 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 SATB1Q01826 763 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 SART3Q15020 963 aaKnown RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 SRGAP1Q7Z6B7 1085 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 BRF1Q92994 677 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 A1CFQ9NQ94 594 aaKnown RBP12.43□□□□□ -0.42
USP3-206ENST00000558157 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
USP3-206ENST00000558157 GNG11P61952 73 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 TOB2Q14106 344 aaPredicted RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 KRT32Q14532 448 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 PRR5LQ6MZQ0 368 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 ERCC4Q92889 916 aaPredicted RBP12.42□□□□□ -0.42
USP3-206ENST00000558157 KIFC2Q96AC6 838 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 AKAP2Q9Y2D5 859 aa12.42□□□□□ -0.42
USP3-206ENST00000558157 NRXN2Q9P2S2 1712 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms