RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PSMD2Q13200 908 aa9.49□□□□□ -0.89
RTF1-204ENST00000558117 PRR23CQ6ZRP0 262 aa9.49□□□□□ -0.89
RTF1-204ENST00000558117 C12orf50Q8NA57 414 aaPredicted RBP9.49□□□□□ -0.89
RTF1-204ENST00000558117 PPM1HQ9ULR3 514 aa9.49□□□□□ -0.89
RTF1-204ENST00000558117 ROBO1Q9Y6N7 1651 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 PREPP48147 710 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 TMC4Q7Z404 712 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 SMG8Q8ND04 991 aaKnown RBP9.48□□□□□ -0.89
RTF1-204ENST00000558117 RGS22Q8NE09 1264 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 FAM46AQ96IP4 442 aaKnown RBP9.48□□□□□ -0.89
RTF1-204ENST00000558117 RAD18Q9NS91 495 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 EP400Q96L91 3159 aa9.48□□□□□ -0.89
RTF1-204ENST00000558117 MYRFLQ96LU7 910 aa9.47□□□□□ -0.89
RTF1-204ENST00000558117 CEP44Q9C0F1 390 aa9.47□□□□□ -0.89
RTF1-204ENST00000558117 SUGCTQ9HAC7 445 aa9.47□□□□□ -0.89
RTF1-204ENST00000558117 DEPDC5O75140 1603 aa9.46□□□□□ -0.89
RTF1-204ENST00000558117 FBXO24O75426 580 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 DLGAP3O95886 979 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 CTSBP07858 339 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 ZNF16P17020 682 aaPredicted RBP9.46□□□□□ -0.9
RTF1-204ENST00000558117 RBM6P78332 1123 aaKnown RBP9.46□□□□□ -0.9
RTF1-204ENST00000558117 ZNF326Q5BKZ1 582 aaKnown RBP9.46□□□□□ -0.9
RTF1-204ENST00000558117 TPTE2Q6XPS3 522 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.46□□□□□ -0.9
RTF1-204ENST00000558117 ARMC10Q8N2F6 343 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 KCNF1Q9H3M0 494 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 PODXL2Q9NZ53 605 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 HIF3AQ9Y2N7 669 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 RAXQ9Y2V3 346 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 CEP350Q5VT06 3117 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 ABCC1P33527 1531 aa9.46□□□□□ -0.9
RTF1-204ENST00000558117 ECEL1O95672 775 aa9.45□□□□□ -0.9
RTF1-204ENST00000558117 CTSHP09668 335 aa9.45□□□□□ -0.9
RTF1-204ENST00000558117 TTF2Q9UNY4 1162 aaKnown RBP9.45□□□□□ -0.9
RTF1-204ENST00000558117 SAMM50Q9Y512 469 aa9.45□□□□□ -0.9
RTF1-204ENST00000558117 XIRP1Q702N8 1843 aaKnown RBP9.45□□□□□ -0.9
RTF1-204ENST00000558117 GSTP1P09211 210 aaKnown RBP9.44□□□□□ -0.9
RTF1-204ENST00000558117 BMP3P12645 472 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 AKAP4Q5JQC9 854 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 SULF2Q8IWU5 870 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 THEMISQ8N1K5 641 aaPredicted RBP9.44□□□□□ -0.9
RTF1-204ENST00000558117 EMILIN2Q9BXX0 1053 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 ZC3H12CQ9C0D7 883 aaKnown RBP9.44□□□□□ -0.9
RTF1-204ENST00000558117 STOML1Q9UBI4 398 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 CCDC9Q9Y3X0 531 aaKnown RBP9.44□□□□□ -0.9
RTF1-204ENST00000558117 AFF2P51816 1311 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 FGD6Q6ZV73 1430 aa9.44□□□□□ -0.9
RTF1-204ENST00000558117 CLTCQ00610 1675 aaKnown RBP9.44□□□□□ -0.9
RTF1-204ENST00000558117 IQGAP1P46940 1657 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 CTTNBP2Q8WZ74 1663 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 KDM5DQ9BY66 1539 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 SORBS3O60504 671 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 TIAF1O95411 115 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 ADH5P11766 374 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 ITGAEP38570 1179 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 USP11P51784 963 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 SOX4Q06945 474 aaPredicted RBP9.43□□□□□ -0.9
RTF1-204ENST00000558117 PRSS36Q5K4E3 855 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 MEI1Q5TIA1 1274 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 STK35Q8TDR2 534 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 KCNB2Q92953 911 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 NECAB3Q96P71 396 aaPredicted RBP9.43□□□□□ -0.9
RTF1-204ENST00000558117 YIPF2Q9BWQ6 316 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 CBX8Q9HC52 389 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 AP4E1Q9UPM8 1137 aa9.43□□□□□ -0.9
RTF1-204ENST00000558117 NME2P22392 152 aa9.42□□□□□ -0.9
RTF1-204ENST00000558117 FAM20CQ8IXL6 584 aa9.42□□□□□ -0.9
RTF1-204ENST00000558117 BCL11AQ9H165 835 aa9.42□□□□□ -0.9
RTF1-204ENST00000558117 PHLPP1O60346 1717 aa9.42□□□□□ -0.9
RTF1-204ENST00000558117 COL16A1Q07092 1604 aaPredicted RBP9.42□□□□□ -0.9
RTF1-204ENST00000558117 TNRQ92752 1358 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 RBM47A0AV96 593 aaKnown RBP9.41□□□□□ -0.9
RTF1-204ENST00000558117 ENC1O14682 589 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 GSC2O15499 205 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 PAGE1O75459 146 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 DRD2P14416 443 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 BEND4Q6ZU67 534 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 ANKRD24Q8TF21 1146 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 MRS2Q9HD23 443 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 KRT82Q9NSB4 513 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 VTI1BQ9UEU0 232 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 NHSL1Q5SYE7 1610 aa9.41□□□□□ -0.9
RTF1-204ENST00000558117 LRRC9Q6ZRR7 1453 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 TMEM94Q12767 1356 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 AOC2O75106 756 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 CELA3AP09093 270 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 SLFN14P0C7P3 912 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 LIG1P18858 919 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 FSTP19883 344 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 ARNTP27540 789 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 SGO2Q562F6 1265 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 DYMQ7RTS9 669 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 WDR18Q9BV38 432 aa9.4□□□□□ -0.9
RTF1-204ENST00000558117 CCDC86Q9H6F5 360 aaKnown RBP9.4□□□□□ -0.9
RTF1-204ENST00000558117 MAP4P27816 1152 aaKnown RBP9.39□□□□□ -0.91
RTF1-204ENST00000558117 MRPL58Q14197 206 aaKnown RBP9.39□□□□□ -0.91
RTF1-204ENST00000558117 MAP1SQ66K74 1059 aaPredicted RBP9.39□□□□□ -0.91
RTF1-204ENST00000558117 CLEC10AQ8IUN9 316 aa9.39□□□□□ -0.91
RTF1-204ENST00000558117 C2CD4AQ8NCU7 369 aaPredicted RBP9.39□□□□□ -0.91
RTF1-204ENST00000558117 ACSBG1Q96GR2 724 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms