RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 VPS72Q15906 364 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 PARP10Q53GL7 1025 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC70Q6NSX1 233 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC91Q7Z6B0 441 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 AMIGO3Q86WK7 504 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 TTC30AQ86WT1 665 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 MB21D2Q8IYB1 491 aaPredicted RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 UBA5Q9GZZ9 404 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 BCL2L12Q9HB09 334 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 RABL2BQ9UNT1 228 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 ATP6V1DQ9Y5K8 247 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 WTIPA6NIX2 430 aaPredicted RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 CAPN15O75808 1086 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 ECEL1O95672 775 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 PDCP20941 246 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 CHAF1AQ13111 956 aaPredicted RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 SLC9C2Q5TAH2 1124 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 FNBP4Q8N3X1 1017 aaPredicted RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 C8orf37Q96NL8 207 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 LRRC27Q9C0I9 530 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 NCOA5Q9HCD5 579 aaKnown RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 ELP1O95163 1332 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 ZNF532Q9HCE3 1301 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 PDE6AP16499 860 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 PDIA3P30101 505 aaKnown RBP5.86□□□□□ -1.47
TMEM260-210ENST00000556422 RESTQ13127 1097 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 UBE3CQ15386 1083 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 DDX11Q96FC9 970 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 FUCA2Q9BTY2 467 aa5.86□□□□□ -1.47
TMEM260-210ENST00000556422 FDPSP14324 419 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ABL2P42684 1182 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CC2D1AQ6P1N0 951 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 TBC1D10CQ8IV04 446 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 OGFOD1Q8N543 542 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 SPATA5Q8NB90 893 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 SMARCC1Q92922 1105 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ARPC5LQ9BPX5 153 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 LLPHQ9BRT6 129 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 HPS5Q9UPZ3 1129 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 MYH2Q9UKX2 1941 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CNTNAP4Q9C0A0 1308 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 PTPDC1A2A3K4 754 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 IDH1O75874 414 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ADD1P35611 737 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 FLT3P36888 993 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC173Q0VFZ6 552 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 TTF1Q15361 905 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 LRRFIP1Q32MZ4 808 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CLEC4GQ6UXB4 293 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 PRPF38AQ8NAV1 312 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 PMM1Q92871 262 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ZNF274Q96GC6 653 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 EPB41L4AQ9HCS5 686 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 DIS3Q9Y2L1 958 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 TACC3Q9Y6A5 838 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 UBR3Q6ZT12 1888 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ZNF804BA4D1E1 1349 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 UNCXA6NJT0 531 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 PPFIA3O75145 1194 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 COQ9O75208 318 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CHRNDQ07001 517 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 IMMTQ16891 758 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ERFEQ4G0M1 354 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC152Q4G0S7 254 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC183Q5T5S1 534 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 ZNF772Q68DY9 489 aaPredicted RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 KLHL23Q8NBE8 558 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 RANBP17Q9H2T7 1088 aaKnown RBP5.85□□□□□ -1.47
TMEM260-210ENST00000556422 MED4Q9NPJ6 270 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 CARMIL3Q8ND23 1372 aa5.85□□□□□ -1.47
TMEM260-210ENST00000556422 NAT2P11245 290 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 BCAMP50895 628 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 KRT85P78386 507 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 FAM182BQ5T319 152 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 TRIML1Q8N9V2 468 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 RNF214Q8ND24 703 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 DRC1Q96MC2 740 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 STRBPQ96SI9 672 aaKnown RBP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 MPHOSPH8Q99549 860 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 CWC15Q9P013 229 aaKnown RBP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 CTNNA3Q9UI47 895 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 KIAA1551Q9HCM1 1747 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 KIF5CO60282 957 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 UQCRFS1P1P0C7P4 283 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 UVSSAQ2YD98 709 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 AP1ARQ63HQ0 302 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 TBC1D9BQ66K14 1250 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 JMYQ8N9B5 988 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 LEO1Q8WVC0 666 aaPredicted RBP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 SYAP1Q96A49 352 aaPredicted RBP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 NGLY1Q96IV0 654 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 PGBD1Q96JS3 809 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 ZNF396Q96N95 335 aaPredicted RBP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 USP25Q9UHP3 1055 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.84□□□□□ -1.47
TMEM260-210ENST00000556422 CCDC88AQ3V6T2 1871 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 ZMYM6O95789 1325 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 MYH6P13533 1939 aa5.84□□□□□ -1.47
TMEM260-210ENST00000556422 SHTN1A0MZ66 631 aa5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms