RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 STK10O94804 968 aaKnown RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 HCLS1P14317 486 aaPredicted RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 IREB2P48200 963 aaKnown RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 ETF1P62495 437 aaKnown RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 COL9A2Q14055 689 aaPredicted RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 TMEM130Q8N3G9 435 aa8.9□□□□□ -0.98
LINC00643-204ENST00000555934 SMG8Q8ND04 991 aaKnown RBP8.9□□□□□ -0.98
LINC00643-204ENST00000555934 UBXN4Q92575 508 aa8.9□□□□□ -0.98
LINC00643-204ENST00000555934 DISC1Q9NRI5 854 aa8.9□□□□□ -0.98
LINC00643-204ENST00000555934 SART1O43290 800 aaKnown RBP8.89□□□□□ -0.99
LINC00643-204ENST00000555934 HTR3BO95264 441 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 PGRP06401 933 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 PLCG1P19174 1290 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 ETFBP38117 255 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 PREPP48147 710 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 TTLL4Q14679 1199 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 PMFBP1Q8TBY8 1022 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 ANTXR1Q9H6X2 564 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 ZNF408Q9H9D4 720 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 SUGCTQ9HAC7 445 aa8.89□□□□□ -0.99
LINC00643-204ENST00000555934 RNGTTO60942 597 aaKnown RBP8.88□□□□□ -0.99
LINC00643-204ENST00000555934 NOS3P29474 1203 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 ASPAP45381 313 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 EIF6P56537 245 aaKnown RBP8.88□□□□□ -0.99
LINC00643-204ENST00000555934 ERVK-24P63145 666 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 TXNRD3Q86VQ6 643 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 REXO1Q8N1G1 1221 aaKnown RBP8.88□□□□□ -0.99
LINC00643-204ENST00000555934 WFDC12Q8WWY7 111 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 CRBNQ96SW2 442 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 PIDD1Q9HB75 910 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 REV1Q9UBZ9 1251 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 KLHL3Q9UH77 587 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 ACTL7BQ9Y614 415 aa8.88□□□□□ -0.99
LINC00643-204ENST00000555934 TIAF1O95411 115 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 RAB6AP20340 208 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 ZBTB37Q5TC79 503 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 ANKRD34AQ69YU3 496 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 UBE3DQ7Z6J8 389 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 C2CD4AQ8NCU7 369 aaPredicted RBP8.87□□□□□ -0.99
LINC00643-204ENST00000555934 SHDQ96IW2 340 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 WNT10AQ9GZT5 417 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 ATXN3LQ9H3M9 355 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 EHMT1Q9H9B1 1298 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 LGR6Q9HBX8 967 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 FAM105AQ9NUU6 356 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 ZNRF3Q9ULT6 936 aa8.87□□□□□ -0.99
LINC00643-204ENST00000555934 GAS2O43903 313 aaKnown RBP8.86□□□□□ -0.99
LINC00643-204ENST00000555934 NEFMP07197 916 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 RING1Q06587 406 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 PDE4BQ07343 736 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 RUFY4Q6ZNE9 571 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 Q6ZS46 218 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 FAM169BQ8N8A8 192 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 UBL7Q96S82 380 aaPredicted RBP8.86□□□□□ -0.99
LINC00643-204ENST00000555934 SSU72Q9NP77 194 aaKnown RBP8.86□□□□□ -0.99
LINC00643-204ENST00000555934 STRIP2Q9ULQ0 834 aa8.86□□□□□ -0.99
LINC00643-204ENST00000555934 SYNGAP1Q96PV0 1343 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 DNAJA2O60884 412 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 ATE1O95260 518 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 GATA4P43694 442 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 USP11P51784 963 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 RNF214Q8ND24 703 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 FBRSQ9HAH7 460 aa8.85□□□□□ -0.99
LINC00643-204ENST00000555934 UPK3BL1B0FP48 263 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 UPK3BL2E5RIL1 263 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 SMAD7O15105 426 aaKnown RBP8.84□□□□□ -0.99
LINC00643-204ENST00000555934 NTF4P34130 210 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 CDC37L1Q7L3B6 337 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 LSRQ86X29 649 aaPredicted RBP8.84□□□□□ -0.99
LINC00643-204ENST00000555934 HNRNPLLQ8WVV9 542 aaKnown RBP8.84□□□□□ -0.99
LINC00643-204ENST00000555934 ISL2Q96A47 359 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 ACSF2Q96CM8 615 aaPredicted RBP8.84□□□□□ -0.99
LINC00643-204ENST00000555934 MEGF10Q96KG7 1140 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 DPH2Q9BQC3 489 aaPredicted RBP8.84□□□□□ -0.99
LINC00643-204ENST00000555934 CEP41Q9BYV8 373 aa8.84□□□□□ -0.99
LINC00643-204ENST00000555934 PRR36Q9H6K5 1346 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 FAM86C2PA6NEL3 165 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 CHURC1-FNTBB4DL54 471 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 FANCGO15287 622 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 GIPRP48546 466 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 MLECQ14165 292 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 NKG7Q16617 165 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 SGO2Q562F6 1265 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 OVOS1Q6IE37 1185 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 CDPF1Q6NVV7 123 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 ANKS3Q6ZW76 656 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 ZNF507Q8TCN5 953 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 FBLIM1Q8WUP2 373 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 TJP2Q9UDY2 1190 aa8.83□□□□□ -1
LINC00643-204ENST00000555934 IMPDH2P12268 514 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 RXRBP28702 533 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 PPP2R5EQ16537 467 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 SMYD4Q8IYR2 804 aaPredicted RBP8.82□□□□□ -1
LINC00643-204ENST00000555934 FAM13CQ8NE31 585 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 XAGE3Q8WTP9 111 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 UTP4Q969X6 686 aaKnown RBP8.82□□□□□ -1
LINC00643-204ENST00000555934 DAGLAQ9Y4D2 1042 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 TACC3Q9Y6A5 838 aa8.82□□□□□ -1
LINC00643-204ENST00000555934 SLC22A31A6NKX4 558 aa8.81□□□□□ -1
LINC00643-204ENST00000555934 ARSHQ5FYA8 562 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms