RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 SH3BP5LQ7L8J4 393 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 SAPCD2Q86UD0 394 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 ANKRD13AQ8IZ07 590 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 HHIPL1Q96JK4 782 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 WRNIP1Q96S55 665 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 NAPBQ9H115 298 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 EHD4Q9H223 541 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT2-218ENST00000555213 CSADQ9Y600 493 aa13.01□□□□□ -0.33
SHMT2-218ENST00000555213 DDX60LQ5H9U9 1706 aaKnown RBP13.01□□□□□ -0.33
SHMT2-218ENST00000555213 GSG1L2A8MUP6 293 aa13□□□□□ -0.33
SHMT2-218ENST00000555213 PATL2C9JE40 543 aaKnown RBP13□□□□□ -0.33
SHMT2-218ENST00000555213 TBC1D12O60347 775 aa13□□□□□ -0.33
SHMT2-218ENST00000555213 SLC4A8Q2Y0W8 1093 aa13□□□□□ -0.33
SHMT2-218ENST00000555213 MIGA2Q7L4E1 593 aa13□□□□□ -0.33
SHMT2-218ENST00000555213 FOXP4Q8IVH2 680 aaPredicted RBP13□□□□□ -0.33
SHMT2-218ENST00000555213 LSG1Q9H089 658 aaKnown RBP13□□□□□ -0.33
SHMT2-218ENST00000555213 MKRN1Q9UHC7 482 aaKnown RBP13□□□□□ -0.33
SHMT2-218ENST00000555213 SERPINB13Q9UIV8 391 aa13□□□□□ -0.33
SHMT2-218ENST00000555213 CDK5RAP2Q96SN8 1893 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 USP17L12C9JPN9 530 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 USP17L21D6R901 530 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 UBE2Q2LH0YL09 131 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 SLC3A2P08195 630 aaKnown RBP12.99□□□□□ -0.33
SHMT2-218ENST00000555213 ECE1P42892 770 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 ZNF589Q86UQ0 364 aaPredicted RBP12.99□□□□□ -0.33
SHMT2-218ENST00000555213 IFNL3Q8IZI9 196 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 JMYQ8N9B5 988 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.99□□□□□ -0.335e-6■■□□□ 11.5
SHMT2-218ENST00000555213 KLRG1Q96E93 195 aa12.99□□□□□ -0.33
SHMT2-218ENST00000555213 ZMYM6O95789 1325 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 RASSF10A6NK89 507 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 USP2O75604 605 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-218ENST00000555213 ZNF157P51786 506 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-218ENST00000555213 MAP3K9P80192 1104 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 PTH1RQ03431 593 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 DEFB115Q30KQ5 88 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 SBK1Q52WX2 424 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 LDLRAD1Q5T700 205 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 RGMBQ6NW40 437 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 KIAA1211Q6ZU35 1233 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 MOB2Q70IA6 237 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 CCDC102AQ96A19 550 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 ZNF287Q9HBT7 754 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 EPB41L4AQ9HCS5 686 aaPredicted RBP12.98□□□□□ -0.33
SHMT2-218ENST00000555213 PICK1Q9NRD5 415 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 SWAP70Q9UH65 585 aa12.98□□□□□ -0.33
SHMT2-218ENST00000555213 MINDY4BA8MYZ0 360 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 CTNND1O60716 968 aaKnown RBP12.97□□□□□ -0.33
SHMT2-218ENST00000555213 CYP2D6P10635 497 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 HSPD1P10809 573 aaKnown RBP12.97□□□□□ -0.33
SHMT2-218ENST00000555213 MAP3K10Q02779 954 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 VGLL4Q14135 290 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 C12orf60Q5U649 245 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 CTR9Q6PD62 1173 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 METTL16Q86W50 562 aaKnown RBP12.97□□□□□ -0.33
SHMT2-218ENST00000555213 SLC10A4Q96EP9 437 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 IL17RAQ96F46 866 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 DSCC1Q9BVC3 393 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 CTNNA3Q9UI47 895 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 ZNF112Q9UJU3 913 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 FZD1Q9UP38 647 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 MYH1P12882 1939 aa12.97□□□□□ -0.33
SHMT2-218ENST00000555213 ROBO3Q96MS0 1386 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 FAM196BA6NMK8 535 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 EPB41L2O43491 1005 aaKnown RBP12.96□□□□□ -0.33
SHMT2-218ENST00000555213 PLCD1P51178 756 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 HTRA3P83110 453 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 GRM1Q13255 1194 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 ALX1Q15699 326 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 NOL9Q5SY16 702 aaKnown RBP12.96□□□□□ -0.33
SHMT2-218ENST00000555213 VPS53Q5VIR6 699 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 SCYL3Q8IZE3 742 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 TNS4Q8IZW8 715 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 GINM1Q9NU53 330 aa12.96□□□□□ -0.33
SHMT2-218ENST00000555213 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-218ENST00000555213 LAMB1P07942 1786 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 CYP2D7A0A087X1C5 515 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 EIF5BO60841 1220 aaKnown RBP12.95□□□□□ -0.34
SHMT2-218ENST00000555213 REC8O95072 547 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 INPP5BP32019 993 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 PDE4BQ07343 736 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 PPARAQ07869 468 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 NOGQ13253 232 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-218ENST00000555213 RASAL3Q86YV0 1011 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 MAP4K1Q92918 833 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 KCNB2Q92953 911 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 ZKSCAN4Q969J2 545 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-218ENST00000555213 CLMNQ96JQ2 1002 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 CAPNS2Q96L46 248 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 DNAJC18Q9H819 358 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 ELP3Q9H9T3 547 aa12.95□□□□□ -0.34
SHMT2-218ENST00000555213 OTOFQ9HC10 1997 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 SPDYE5A6NIY4 337 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 PHF20L1A8MW92 1017 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 FOXP2O15409 715 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 FGAP02671 866 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 ASNSP08243 561 aa12.94□□□□□ -0.34
SHMT2-218ENST00000555213 SLC10A3P09131 477 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms