RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 DOCK1Q14185 1865 aa27.47■■□□□ 1.99
TDP1-206ENST00000553569 BAZ2AQ9UIF9 1905 aaKnown RBP27.46■■□□□ 1.99
TDP1-206ENST00000553569 PHF20L1A8MW92 1017 aa27.46■■□□□ 1.99
TDP1-206ENST00000553569 ZBTB48P10074 688 aaPredicted RBP27.46■■□□□ 1.99
TDP1-206ENST00000553569 MAP3K10Q02779 954 aa27.46■■□□□ 1.99
TDP1-206ENST00000553569 CRACR2BQ8N4Y2 399 aaPredicted RBP27.46■■□□□ 1.99
TDP1-206ENST00000553569 RILPL2Q969X0 211 aa27.46■■□□□ 1.99
TDP1-206ENST00000553569 BEGAINQ9BUH8 593 aa27.46■■□□□ 1.99
TDP1-206ENST00000553569 TRIM34Q9BYJ4 488 aa27.46■■□□□ 1.99
TDP1-206ENST00000553569 M0R2C6 588 aa27.45■■□□□ 1.98
TDP1-206ENST00000553569 TBC1D12O60347 775 aa27.45■■□□□ 1.98
TDP1-206ENST00000553569 DCP1AQ9NPI6 582 aaPredicted RBP27.45■■□□□ 1.98
TDP1-206ENST00000553569 HERC5Q9UII4 1024 aaKnown RBP27.45■■□□□ 1.98
TDP1-206ENST00000553569 SLC4A4Q9Y6R1 1079 aa27.45■■□□□ 1.98
TDP1-206ENST00000553569 SPDYE5A6NIY4 337 aa27.44■■□□□ 1.98
TDP1-206ENST00000553569 POLR3DP05423 398 aaPredicted RBP27.44■■□□□ 1.98
TDP1-206ENST00000553569 NOL9Q5SY16 702 aaKnown RBP27.44■■□□□ 1.98
TDP1-206ENST00000553569 MCM9Q9NXL9 1143 aa27.44■■□□□ 1.98
TDP1-206ENST00000553569 LAMB1P07942 1786 aa27.44■■□□□ 1.98
TDP1-206ENST00000553569 ATAD5Q96QE3 1844 aa27.44■■□□□ 1.98
TDP1-206ENST00000553569 ERO1BQ86YB8 467 aa27.43■■□□□ 1.98
TDP1-206ENST00000553569 SCYL3Q8IZE3 742 aa27.43■■□□□ 1.98
TDP1-206ENST00000553569 SEC62Q99442 399 aaKnown RBP27.43■■□□□ 1.98
TDP1-206ENST00000553569 PCNTO95613 3336 aa27.43■■□□□ 1.98
TDP1-206ENST00000553569 FOXN1O15353 648 aa27.42■■□□□ 1.98
TDP1-206ENST00000553569 GPAA1O43292 621 aa27.42■■□□□ 1.98
TDP1-206ENST00000553569 ZMYM1Q5SVZ6 1142 aa27.42■■□□□ 1.98
TDP1-206ENST00000553569 CENPQQ7L2Z9 268 aaPredicted RBP27.42■■□□□ 1.98
TDP1-206ENST00000553569 STRBPQ96SI9 672 aaKnown RBP27.42■■□□□ 1.98
TDP1-206ENST00000553569 DNAJC18Q9H819 358 aa27.42■■□□□ 1.98
TDP1-206ENST00000553569 PICK1Q9NRD5 415 aa27.42■■□□□ 1.98
TDP1-206ENST00000553569 MANSC4A6NHS7 340 aaPredicted RBP27.41■■□□□ 1.98
TDP1-206ENST00000553569 SREBF2Q12772 1141 aa27.41■■□□□ 1.98
TDP1-206ENST00000553569 TTC6Q86TZ1 520 aa27.41■■□□□ 1.98
TDP1-206ENST00000553569 FOXP4Q8IVH2 680 aaPredicted RBP27.41■■□□□ 1.98
TDP1-206ENST00000553569 REM2Q8IYK8 340 aaPredicted RBP27.41■■□□□ 1.98
TDP1-206ENST00000553569 CCDC136Q96JN2 1154 aa27.41■■□□□ 1.98
TDP1-206ENST00000553569 ATP8A2Q9NTI2 1148 aa27.41■■□□□ 1.98
TDP1-206ENST00000553569 CTNND1O60716 968 aaKnown RBP27.4■■□□□ 1.98
TDP1-206ENST00000553569 CYP2D6P10635 497 aa27.4■■□□□ 1.98
TDP1-206ENST00000553569 PLCD1P51178 756 aa27.4■■□□□ 1.98
TDP1-206ENST00000553569 DDRGK1Q96HY6 314 aa27.4■■□□□ 1.98
TDP1-206ENST00000553569 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.4■■□□□ 1.98
TDP1-206ENST00000553569 EVX2Q03828 476 aa27.39■■□□□ 1.98
TDP1-206ENST00000553569 PPIL2Q13356 520 aa27.39■■□□□ 1.98
TDP1-206ENST00000553569 RRP1BQ14684 758 aaKnown RBP27.39■■□□□ 1.98
TDP1-206ENST00000553569 METTL16Q86W50 562 aaKnown RBP27.39■■□□□ 1.98
TDP1-206ENST00000553569 SERPINB13Q9UIV8 391 aa27.39■■□□□ 1.98
TDP1-206ENST00000553569 TSKSQ9UJT2 592 aa27.39■■□□□ 1.98
TDP1-206ENST00000553569 PPATQ06203 517 aa27.38■■□□□ 1.97
TDP1-206ENST00000553569 EHD4Q9H223 541 aa27.38■■□□□ 1.97
TDP1-206ENST00000553569 IRF6O14896 467 aa27.37■■□□□ 1.97
TDP1-206ENST00000553569 TTC22Q5TAA0 569 aa27.37■■□□□ 1.97
TDP1-206ENST00000553569 CCDC129Q6ZRS4 1044 aa27.37■■□□□ 1.97
TDP1-206ENST00000553569 CCDC84Q86UT8 332 aaPredicted RBP27.37■■□□□ 1.97
TDP1-206ENST00000553569 PHIPQ8WWQ0 1821 aa27.37■■□□□ 1.97
TDP1-206ENST00000553569 CYP2D7A0A087X1C5 515 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 GDF11O95390 407 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 PTPRAP18433 802 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 CAP2P40123 477 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 TM4SF4P48230 202 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 GTF2A2P52657 109 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 AMOTL1Q8IY63 956 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 FAM227BQ96M60 508 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 RNF186Q9NXI6 227 aa27.36■■□□□ 1.97
TDP1-206ENST00000553569 CCL15-CCL14A0A0B4J2E2 113 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 A0A0D9SFI3 127 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 GSG1L2A8MUP6 293 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 USP17L12C9JPN9 530 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 USP17L21D6R901 530 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 CA12O43570 354 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 TRPA1O75762 1119 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 APPP05067 770 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 GSPT1P15170 499 aaKnown RBP27.35■■□□□ 1.97
TDP1-206ENST00000553569 GNAT2P19087 354 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 CTCFP49711 727 aaPredicted RBP27.35■■□□□ 1.97
TDP1-206ENST00000553569 NMIQ13287 307 aaPredicted RBP27.35■■□□□ 1.97
TDP1-206ENST00000553569 CCL15Q16663 113 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 MS4A4AQ96JQ5 239 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 ZHX2Q9Y6X8 837 aa27.35■■□□□ 1.97
TDP1-206ENST00000553569 MYH8P13535 1937 aa27.34■■□□□ 1.97
TDP1-206ENST00000553569 HSPA8P11142 646 aaKnown RBP27.34■■□□□ 1.97
TDP1-206ENST00000553569 SNAPC2Q13487 334 aa27.34■■□□□ 1.97
TDP1-206ENST00000553569 SHROOM1Q2M3G4 852 aaPredicted RBP27.34■■□□□ 1.97
TDP1-206ENST00000553569 EPB41L4AQ9HCS5 686 aaPredicted RBP27.34■■□□□ 1.97
TDP1-206ENST00000553569 IGF2BP3O00425 579 aaKnown RBP eCLIP27.33■■□□□ 1.97
TDP1-206ENST00000553569 SDSP20132 328 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 TDO2P48775 406 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 INHBEP58166 350 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 CTR9Q6PD62 1173 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 SKAP1Q86WV1 359 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 IFNL1Q8IU54 200 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 BRI3BPQ8WY22 251 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 DYNLL2Q96FJ2 89 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 HELLSQ9NRZ9 838 aa27.33■■□□□ 1.97
TDP1-206ENST00000553569 ARPP21Q9UBL0 812 aaPredicted RBP27.33■■□□□ 1.97
TDP1-206ENST00000553569 SMIM22K7EJ46 135 aa27.32■■□□□ 1.96
TDP1-206ENST00000553569 GABPAQ06546 454 aa27.32■■□□□ 1.96
TDP1-206ENST00000553569 C12orf60Q5U649 245 aa27.32■■□□□ 1.96
TDP1-206ENST00000553569 TICAM2Q86XR7 235 aa27.32■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms