RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CEP85Q6P2H3 762 aa15.58■□□□□ 0.08
LINC00643-202ENST00000553426 CERS3Q8IU89 383 aa15.58■□□□□ 0.08
LINC00643-202ENST00000553426 PANK1Q8TE04 598 aa15.58■□□□□ 0.08
LINC00643-202ENST00000553426 SH3RF3Q8TEJ3 882 aaPredicted RBP15.58■□□□□ 0.08
LINC00643-202ENST00000553426 CCDC8Q9H0W5 538 aaPredicted RBP15.58■□□□□ 0.08
LINC00643-202ENST00000553426 PI4KBQ9UBF8 816 aa15.58■□□□□ 0.08
LINC00643-202ENST00000553426 DBNLQ9UJU6 430 aaKnown RBP15.58■□□□□ 0.08
LINC00643-202ENST00000553426 ADGRA2Q96PE1 1338 aa15.58■□□□□ 0.08
LINC00643-202ENST00000553426 MYCP01106 439 aaPredicted RBP15.57■□□□□ 0.08
LINC00643-202ENST00000553426 ZAP70P43403 619 aa15.57■□□□□ 0.08
LINC00643-202ENST00000553426 CRACR2BQ8N4Y2 399 aaPredicted RBP15.57■□□□□ 0.08
LINC00643-202ENST00000553426 TRIM47Q96LD4 638 aa15.57■□□□□ 0.08
LINC00643-202ENST00000553426 CHMP4BQ9H444 224 aaKnown RBP15.57■□□□□ 0.08
LINC00643-202ENST00000553426 AS3MTQ9HBK9 375 aa15.57■□□□□ 0.08
LINC00643-202ENST00000553426 PNMA3Q9UL41 463 aa15.57■□□□□ 0.08
LINC00643-202ENST00000553426 MYPNQ86TC9 1320 aa15.57■□□□□ 0.08
LINC00643-202ENST00000553426 KIAA0100Q14667 2235 aaKnown RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 FAM196BA6NMK8 535 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 IDH1O75874 414 aaKnown RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 SLURP2P0DP57 97 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 BCRP11274 1271 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 EN2P19622 333 aaPredicted RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 OSBPP22059 807 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 CAP2P40123 477 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 PABPC4Q13310 644 aaKnown RBP eCLIP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 AACSQ86V21 672 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 PROCA1Q8NCQ7 364 aaPredicted RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 ZNF280CQ8ND82 737 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 SH3TC2Q8TF17 1288 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 TGFBRAP1Q8WUH2 860 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 EAF2Q96CJ1 260 aaPredicted RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 GCC1Q96CN9 775 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 BIN2Q9UBW5 565 aaPredicted RBP15.56■□□□□ 0.08
LINC00643-202ENST00000553426 AGTPBP1Q9UPW5 1226 aa15.56■□□□□ 0.08
LINC00643-202ENST00000553426 DOCK1Q14185 1865 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 USP17L5A8MUK1 530 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 HMMRO75330 724 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 HLA-DOAP06340 250 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 CYP7A1P22680 504 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 MAP3K12Q12852 859 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 SPP2Q13103 211 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 TMED8Q6PL24 325 aaPredicted RBP15.55■□□□□ 0.08
LINC00643-202ENST00000553426 FOXP4Q8IVH2 680 aaPredicted RBP15.55■□□□□ 0.08
LINC00643-202ENST00000553426 MAPKAPK5Q8IW41 473 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 EXOC6BQ9Y2D4 811 aa15.55■□□□□ 0.08
LINC00643-202ENST00000553426 FLT1P17948 1338 aa15.54■□□□□ 0.08
LINC00643-202ENST00000553426 ASNSP08243 561 aa15.54■□□□□ 0.08
LINC00643-202ENST00000553426 GRK4P32298 578 aa15.54■□□□□ 0.08
LINC00643-202ENST00000553426 UBXN2AP68543 259 aa15.54■□□□□ 0.08
LINC00643-202ENST00000553426 CCDC84Q86UT8 332 aaPredicted RBP15.54■□□□□ 0.08
LINC00643-202ENST00000553426 RPAP2Q8IXW5 612 aaPredicted RBP15.54■□□□□ 0.08
LINC00643-202ENST00000553426 PIH1D3Q9NQM4 214 aaKnown RBP15.54■□□□□ 0.08
LINC00643-202ENST00000553426 TLR7Q9NYK1 1049 aaKnown RBP15.54■□□□□ 0.08
LINC00643-202ENST00000553426 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.54■□□□□ 0.08
LINC00643-202ENST00000553426 DDX19BQ9UMR2 479 aa15.54■□□□□ 0.08
LINC00643-202ENST00000553426 SZT2Q5T011 3432 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 CTGFP29279 349 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 ADGRA1Q86SQ6 560 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 MAGEB6Q8N7X4 407 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 NKX2-3Q8TAU0 364 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 GINM1Q9NU53 330 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 MAST2Q6P0Q8 1798 aa15.53■□□□□ 0.08
LINC00643-202ENST00000553426 RBBP6Q7Z6E9 1792 aaKnown RBP15.53■□□□□ 0.08
LINC00643-202ENST00000553426 TNPO2O14787 897 aaKnown RBP15.52■□□□□ 0.08
LINC00643-202ENST00000553426 USP5P45974 858 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 GCLCP48506 637 aaPredicted RBP15.52■□□□□ 0.08
LINC00643-202ENST00000553426 HMGCS2P54868 508 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 PRKCZQ05513 592 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 TTF1Q15361 905 aaPredicted RBP15.52■□□□□ 0.08
LINC00643-202ENST00000553426 TREML2Q5T2D2 321 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 CLASRPQ8N2M8 674 aaKnown RBP15.52■□□□□ 0.08
LINC00643-202ENST00000553426 SLAIN1Q8ND83 568 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 COA7Q96BR5 231 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 TMOD4Q9NZQ9 345 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 PALD1Q9ULE6 856 aa15.52■□□□□ 0.08
LINC00643-202ENST00000553426 IFIT2P09913 472 aaKnown RBP15.51■□□□□ 0.07
LINC00643-202ENST00000553426 FXR1P51114 621 aaKnown RBP eCLIP15.51■□□□□ 0.07
LINC00643-202ENST00000553426 FAM110CQ1W6H9 321 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 ANKRD13CQ8N6S4 541 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 MIGA1Q8NAN2 632 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 RHPN1Q8TCX5 695 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 KIF1BPQ96EK5 621 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 WDR18Q9BV38 432 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 IL1RAPL2Q9NP60 686 aa15.51■□□□□ 0.07
LINC00643-202ENST00000553426 SAP30BPQ9UHR5 308 aaKnown RBP15.51■□□□□ 0.07
LINC00643-202ENST00000553426 ZSWIM8A7E2V4 1837 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 APBB1O00213 710 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 BACE1P56817 501 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 DYNLL1P63167 89 aaKnown RBP15.5■□□□□ 0.07
LINC00643-202ENST00000553426 SH3D19Q5HYK7 790 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 METTL16Q86W50 562 aaKnown RBP15.5■□□□□ 0.07
LINC00643-202ENST00000553426 RNF208Q9H0X6 261 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 COG6Q9Y2V7 657 aa15.5■□□□□ 0.07
LINC00643-202ENST00000553426 C19orf81C9J6K1 198 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 USP17L10C9JJH3 530 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 ADCY3O60266 1144 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 RAB11FIP3O75154 756 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 FLT3LGP49771 235 aa15.49■□□□□ 0.07
LINC00643-202ENST00000553426 IRX3P78415 501 aaPredicted RBP15.49■□□□□ 0.07
LINC00643-202ENST00000553426 MTMR2Q13614 643 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms