RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CBX8Q9HC52 389 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 BRMS1Q9HCU9 246 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 R3HCC1Q9Y3T6 440 aaKnown RBP7.44□□□□□ -1.22
SCFD1-209ENST00000553280 SMAD7O15105 426 aaKnown RBP7.43□□□□□ -1.22
SCFD1-209ENST00000553280 BPNT1O95861 308 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 IMPDH2P12268 514 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 FSTP19883 344 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 AP3B2Q13367 1082 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 PDZD3Q86UT5 571 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 OR6P1Q8NGX9 317 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 UTP4Q969X6 686 aaKnown RBP7.43□□□□□ -1.22
SCFD1-209ENST00000553280 FERD3LQ96RJ6 166 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 SRPK1Q96SB4 655 aaKnown RBP7.43□□□□□ -1.22
SCFD1-209ENST00000553280 SOX17Q9H6I2 414 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-209ENST00000553280 EHMT1Q9H9B1 1298 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 ZFP64Q9NPA5 681 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 RAXQ9Y2V3 346 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 SBNO2Q9Y2G9 1366 aa7.43□□□□□ -1.22
SCFD1-209ENST00000553280 EIF4EBP3O60516 100 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-209ENST00000553280 TRIM37O94972 964 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 CLCQ05315 142 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 PTPN11Q06124 597 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-209ENST00000553280 ARTNQ5T4W7 220 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 FAM169BQ8N8A8 192 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 RBBP8NLQ8NC74 664 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-209ENST00000553280 GAL3ST3Q96A11 431 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 RUSC1Q9BVN2 902 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 CACNA2D2Q9NY47 1150 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 STOML1Q9UBI4 398 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 ZNRF3Q9ULT6 936 aa7.42□□□□□ -1.22
SCFD1-209ENST00000553280 MRPL42Q9Y6G3 142 aaKnown RBP7.42□□□□□ -1.22
SCFD1-209ENST00000553280 PPM1GO15355 546 aaPredicted RBP7.41□□□□□ -1.22
SCFD1-209ENST00000553280 DHX15O43143 795 aaKnown RBP7.41□□□□□ -1.22
SCFD1-209ENST00000553280 SART1O43290 800 aaKnown RBP7.41□□□□□ -1.22
SCFD1-209ENST00000553280 ATE1O95260 518 aa7.41□□□□□ -1.22
SCFD1-209ENST00000553280 HSD3B2P26439 372 aa7.41□□□□□ -1.22
SCFD1-209ENST00000553280 RPL6Q02878 288 aaKnown RBP7.41□□□□□ -1.22
SCFD1-209ENST00000553280 TCEAL1Q15170 157 aa7.41□□□□□ -1.22
SCFD1-209ENST00000553280 USP26Q9BXU7 913 aa7.41□□□□□ -1.22
SCFD1-209ENST00000553280 CCDC113Q9H0I3 377 aa7.41□□□□□ -1.22
SCFD1-209ENST00000553280 GSTP1P09211 210 aaKnown RBP7.4□□□□□ -1.22
SCFD1-209ENST00000553280 PREPP48147 710 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 LRP8Q14114 963 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 RASA3Q14644 834 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 FBXW10Q5XX13 1052 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 MPRIPQ6WCQ1 1025 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 GK5Q6ZS86 529 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 FAM46AQ96IP4 442 aaKnown RBP7.4□□□□□ -1.22
SCFD1-209ENST00000553280 DEPDC7Q96QD5 511 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 RNF208Q9H0X6 261 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 SNTG2Q9NY99 539 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 MSRB2Q9Y3D2 182 aa7.4□□□□□ -1.22
SCFD1-209ENST00000553280 FAM221BA6H8Z2 402 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 HYAL3O43820 417 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-209ENST00000553280 CASP7P55210 303 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 GSTM4Q03013 218 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 UVSSAQ2YD98 709 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 MAP1SQ66K74 1059 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-209ENST00000553280 FDX2Q6P4F2 183 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 CELF2-AS1Q8N7Q2 184 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 RNPC3Q96LT9 517 aaKnown RBP7.39□□□□□ -1.23
SCFD1-209ENST00000553280 MYRFLQ96LU7 910 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 ACTR10Q9NZ32 417 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 RNF112Q9ULX5 631 aa7.39□□□□□ -1.23
SCFD1-209ENST00000553280 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.39□□□□□ -1.23
SCFD1-209ENST00000553280 POLR3KQ9Y2Y1 108 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-209ENST00000553280 CLSTN1O94985 981 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 IGLV1-40P01703 118 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 ANKRD34AQ69YU3 496 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 NBPF11Q86T75 865 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 ANKRD13AQ8IZ07 590 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 KCNF1Q9H3M0 494 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 C7orf69Q9H7B7 122 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 PCDHB14Q9Y5E9 798 aa7.38□□□□□ -1.23
SCFD1-209ENST00000553280 PRR36Q9H6K5 1346 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 LOC100289279A0A1B0GTE1 492 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 HMX2A2RU54 273 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 GFRA2O00451 464 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 ENPP3O14638 875 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 CYP11A1P05108 521 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 BMP3P12645 472 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 DDR2Q16832 855 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.37□□□□□ -1.23
SCFD1-209ENST00000553280 LSRQ86X29 649 aaPredicted RBP7.37□□□□□ -1.23
SCFD1-209ENST00000553280 KCNB2Q92953 911 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 KRT82Q9NSB4 513 aa7.37□□□□□ -1.23
SCFD1-209ENST00000553280 GAS2O43903 313 aaKnown RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 DLGAP3O95886 979 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 CDK11BP21127 795 aaKnown RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 SSTR4P31391 388 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 FXNQ16595 210 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 LRRFIP1Q32MZ4 808 aaKnown RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 NUTM2GQ5VZR2 741 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 FAM20CQ8IXL6 584 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 C19orf47Q8N9M1 422 aaKnown RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 C12orf50Q8NA57 414 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-209ENST00000553280 GPBAR1Q8TDU6 330 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 NRSN2Q9GZP1 204 aa7.36□□□□□ -1.23
SCFD1-209ENST00000553280 TNKS2Q9H2K2 1166 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms