RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ADAM30Q9UKF2 790 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 CSADQ9Y600 493 aa7.5□□□□□ -1.21
LIMA1-205ENST00000550592 MEIS3P2A8K0S8 358 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 ADH5P11766 374 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 PLCG1P19174 1290 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 GRK4P32298 578 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 INSM1Q01101 510 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-205ENST00000550592 TNNI3KQ59H18 835 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 PPM1JQ5JR12 505 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 ZBTB37Q5TC79 503 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 ANKRD34AQ69YU3 496 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 FAM169BQ8N8A8 192 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 RNF214Q8ND24 703 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 SCARF2Q96GP6 870 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-205ENST00000550592 ATXN3LQ9H3M9 355 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 REV1Q9UBZ9 1251 aa7.49□□□□□ -1.21
LIMA1-205ENST00000550592 PRAMEF27A3QJZ7 478 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 DRD2P14416 443 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 COL8A1P27658 744 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 NTF4P34130 210 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 MLECQ14165 292 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 CCDC144BQ3MJ40 725 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 LSRQ86X29 649 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-205ENST00000550592 C12orf50Q8NA57 414 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-205ENST00000550592 PMFBP1Q8TBY8 1022 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 ANTXR1Q9H6X2 564 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 AKTIPQ9H8T0 292 aa7.48□□□□□ -1.21
LIMA1-205ENST00000550592 SLC22A31A6NKX4 558 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 C9orf172C9J069 976 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 SMAD7O15105 426 aaKnown RBP7.47□□□□□ -1.21
LIMA1-205ENST00000550592 PGRP06401 933 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 CASP7P55210 303 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 ETF1P62495 437 aaKnown RBP7.47□□□□□ -1.21
LIMA1-205ENST00000550592 RAB33AQ14088 237 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 Q6ZS46 218 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 AGGF1Q8N302 714 aaeCLIP7.47□□□□□ -1.21
LIMA1-205ENST00000550592 ZNF507Q8TCN5 953 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 TMEM40Q8WWA1 233 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 TM9SF2Q99805 663 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 GMIPQ9P107 970 aa7.47□□□□□ -1.21
LIMA1-205ENST00000550592 DNAJA2O60884 412 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 ALX3O95076 343 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 NRG1Q02297 640 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 SERINC3Q13530 473 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 CDCP2Q5VXM1 449 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 INTS3Q68E01 1043 aaKnown RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 FDX2Q6P4F2 183 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 DYMQ7RTS9 669 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 ALYREFQ86V81 257 aaKnown RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 MCATQ8IVS2 390 aaKnown RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 TAB3Q8N5C8 712 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 C19orf47Q8N9M1 422 aaKnown RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 C2CD4AQ8NCU7 369 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 ACSF2Q96CM8 615 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-205ENST00000550592 NACC1Q96RE7 527 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 OSBPL2Q9H1P3 480 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 PICK1Q9NRD5 415 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 AP4E1Q9UPM8 1137 aa7.46□□□□□ -1.22
LIMA1-205ENST00000550592 NEFMP07197 916 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 TTLL4Q14679 1199 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 HID1Q8IV36 788 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 MRPL41Q8IXM3 137 aaKnown RBP7.45□□□□□ -1.22
LIMA1-205ENST00000550592 HNRNPLLQ8WVV9 542 aaKnown RBP7.45□□□□□ -1.22
LIMA1-205ENST00000550592 MKL1Q969V6 931 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 ATG4CQ96DT6 458 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 CEP41Q9BYV8 373 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 CNNM2Q9H8M5 875 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 SIRPGQ9P1W8 387 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 TJP2Q9UDY2 1190 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 USP21Q9UK80 565 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 ACTL7BQ9Y614 415 aa7.45□□□□□ -1.22
LIMA1-205ENST00000550592 CHURC1-FNTBB4DL54 471 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 APBA3O96018 575 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 NME1P15531 152 aaKnown RBP7.44□□□□□ -1.22
LIMA1-205ENST00000550592 CAP2P40123 477 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 ASPAP45381 313 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 SLC6A19Q695T7 634 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 OVOS1Q6IE37 1185 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 RUFY4Q6ZNE9 571 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 NLRC3Q7RTR2 1065 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 NOP9Q86U38 636 aaKnown RBP7.44□□□□□ -1.22
LIMA1-205ENST00000550592 KCT2Q8NC54 265 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 WFDC12Q8WWY7 111 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 FAM105AQ9NUU6 356 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 ACTR10Q9NZ32 417 aa7.44□□□□□ -1.22
LIMA1-205ENST00000550592 R3HCC1Q9Y3T6 440 aaKnown RBP7.44□□□□□ -1.22
LIMA1-205ENST00000550592 TNFRSF10CO14798 259 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 HCLS1P14317 486 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-205ENST00000550592 GUCY2CP25092 1073 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 NOS3P29474 1203 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 PREPP48147 710 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 ADGRE1Q14246 886 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 CDC37L1Q7L3B6 337 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 SLFN12Q8IYM2 578 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 ISL2Q96A47 359 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 TMEM87BQ96K49 555 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 TRIM55Q9BYV6 548 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 TNKS2Q9H2K2 1166 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 ZSWIM4Q9H7M6 989 aa7.43□□□□□ -1.22
LIMA1-205ENST00000550592 FBRSQ9HAH7 460 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms