RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 CAP1Q01518 475 aa22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 TTF1Q15361 905 aaPredicted RBP22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 GPAT2Q6NUI2 795 aa22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 FOXP4Q8IVH2 680 aaPredicted RBP22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 FLT1P17948 1338 aa22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 DOCK1Q14185 1865 aa22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 FAM196BA6NMK8 535 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 CAP2P40123 477 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 LACTBP83111 547 aaPredicted RBP22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 KIF22Q14807 665 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 METTL16Q86W50 562 aaKnown RBP22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 MAPKAPK5Q8IW41 473 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 MAGEB6Q8N7X4 407 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 TBC1D2Q9BYX2 928 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 NDUFB9Q9Y6M9 179 aa22.7■■□□□ 1.22
CHMP1A-207ENST00000549328 GNRH1P01148 92 aa22.69■■□□□ 1.22
CHMP1A-207ENST00000549328 DYNLL1P63167 89 aaKnown RBP22.69■■□□□ 1.22
CHMP1A-207ENST00000549328 PARK7Q99497 189 aaKnown RBP22.69■■□□□ 1.22
CHMP1A-207ENST00000549328 SLC45A1Q9Y2W3 748 aa22.69■■□□□ 1.22
CHMP1A-207ENST00000549328 ADGRA2Q96PE1 1338 aa22.68■■□□□ 1.22
CHMP1A-207ENST00000549328 FOCADQ5VW36 1801 aa22.67■■□□□ 1.22
CHMP1A-207ENST00000549328 TRIM75PA6NK02 468 aa22.67■■□□□ 1.22
CHMP1A-207ENST00000549328 MIGA1Q8NAN2 632 aa22.67■■□□□ 1.22
CHMP1A-207ENST00000549328 CPA4Q9UI42 421 aa22.67■■□□□ 1.22
CHMP1A-207ENST00000549328 PALD1Q9ULE6 856 aa22.67■■□□□ 1.22
CHMP1A-207ENST00000549328 CDK5RAP2Q96SN8 1893 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 PHIPQ8WWQ0 1821 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 HTTP42858 3142 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 GADL1Q6ZQY3 521 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 ARMC5Q96C12 935 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 GINM1Q9NU53 330 aa22.66■■□□□ 1.22
CHMP1A-207ENST00000549328 USP17L5A8MUK1 530 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 HLA-DOAP06340 250 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 PRMT2P55345 433 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 RRP1BQ14684 758 aaKnown RBP22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 CRACR2BQ8N4Y2 399 aaPredicted RBP22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 ZNF280CQ8ND82 737 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 LRRCC1Q9C099 1032 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 PTPRFP10586 1907 aa22.65■■□□□ 1.22
CHMP1A-207ENST00000549328 ASNSP08243 561 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 CYP2C8P10632 490 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 BCRP11274 1271 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 ATP5JP18859 108 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 USP5P45974 858 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 SPP2Q13103 211 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 SLC9C2Q5TAH2 1124 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 CCDC84Q86UT8 332 aaPredicted RBP22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 PROCA1Q8NCQ7 364 aaPredicted RBP22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 TRIM34Q9BYJ4 488 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 ARHGAP39Q9C0H5 1083 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 DNAJC18Q9H819 358 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 AS3MTQ9HBK9 375 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 AGTPBP1Q9UPW5 1226 aa22.64■■□□□ 1.21
CHMP1A-207ENST00000549328 GOLIM4O00461 696 aa22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 PDE6AP16499 860 aa22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 NBPF11Q86T75 865 aa22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 DNAJC2Q99543 621 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 RIOK1Q9BRS2 568 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 WDR18Q9BV38 432 aa22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 SAP30BPQ9UHR5 308 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 SIPA1L1O43166 1804 aa22.63■■□□□ 1.21
CHMP1A-207ENST00000549328 PSMC4P43686 418 aa22.62■■□□□ 1.21
CHMP1A-207ENST00000549328 BCL11AQ9H165 835 aa22.62■■□□□ 1.21
CHMP1A-207ENST00000549328 PTCH2Q9Y6C5 1203 aa22.62■■□□□ 1.21
CHMP1A-207ENST00000549328 MAGEB6P1A0A0J9YX57 407 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 HOXD10P28358 340 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 SLC9C1Q4G0N8 1177 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 SH3D19Q5HYK7 790 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 TTC6Q86TZ1 520 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 TRIM47Q96LD4 638 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 EHD4Q9H223 541 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 DCTPP1Q9H773 170 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 PAG1Q9NWQ8 432 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 ATAD5Q96QE3 1844 aa22.61■■□□□ 1.21
CHMP1A-207ENST00000549328 HAUS7Q99871 368 aa22.6■■□□□ 1.21
CHMP1A-207ENST00000549328 BOLA2Q9H3K6 86 aa22.6■■□□□ 1.21
CHMP1A-207ENST00000549328 SRRDQ9UH36 339 aa22.6■■□□□ 1.21
CHMP1A-207ENST00000549328 SERPINB13Q9UIV8 391 aa22.6■■□□□ 1.21
CHMP1A-207ENST00000549328 PNMA3Q9UL41 463 aa22.6■■□□□ 1.21
CHMP1A-207ENST00000549328 ZNF532Q9HCE3 1301 aa22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 TCRBV5S4A2TA0A5A2 114 aa22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 CTGFP29279 349 aa22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 PABPC4Q13310 644 aaKnown RBP eCLIP22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 SMCR8Q8TEV9 937 aaPredicted RBP22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 ZNF333Q96JL9 665 aa22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 CRNKL1Q9BZJ0 848 aaKnown RBP22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 MYH1P12882 1939 aa22.59■■□□□ 1.21
CHMP1A-207ENST00000549328 FMNL1O95466 1100 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 HMGCS2P54868 508 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 BACE1P56817 501 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 JAG1P78504 1218 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 TREML2Q5T2D2 321 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 TATDN1Q6P1N9 297 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 EDC3Q96F86 508 aaKnown RBP22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 ZBTB21Q9ULJ3 1066 aa22.58■■□□□ 1.21
CHMP1A-207ENST00000549328 CENPFP49454 3210 aa22.58■■□□□ 1.2
CHMP1A-207ENST00000549328 C19orf81C9J6K1 198 aa22.57■■□□□ 1.2
CHMP1A-207ENST00000549328 OSBPP22059 807 aa22.57■■□□□ 1.2
CHMP1A-207ENST00000549328 FCGRTP55899 365 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms