RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ZBTB43O43298 467 aa16.75■□□□□ 0.27
HOXC11-202ENST00000546378 SAFBQ15424 915 aaKnown RBP eCLIP16.75■□□□□ 0.27
HOXC11-202ENST00000546378 ZSCAN26Q16670 478 aa16.75■□□□□ 0.27
HOXC11-202ENST00000546378 SMARCC2Q8TAQ2 1214 aa16.75■□□□□ 0.27
HOXC11-202ENST00000546378 NUP88Q99567 741 aaPredicted RBP16.75■□□□□ 0.27
HOXC11-202ENST00000546378 HLFQ16534 295 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 LRRFIP1Q32MZ4 808 aaKnown RBP16.74■□□□□ 0.27
HOXC11-202ENST00000546378 JAKMIP3Q5VZ66 844 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 MRPL44Q9H9J2 332 aaKnown RBP16.74■□□□□ 0.27
HOXC11-202ENST00000546378 GPS2Q13227 327 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 ZNF174Q15697 407 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 BICDL1Q6ZP65 573 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 RIN2Q8WYP3 895 aaPredicted RBP16.74■□□□□ 0.27
HOXC11-202ENST00000546378 SLF1Q9BQI6 1058 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 RTEL1Q9NZ71 1219 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 SPATA31A5Q5VU36 1347 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 SPATA31A7Q8IWB4 1347 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 AXDND1Q5T1B0 1012 aaPredicted RBP16.74■□□□□ 0.27
HOXC11-202ENST00000546378 NCAPH2Q6IBW4 605 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 TBC1D10CQ8IV04 446 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 OXER1Q8TDS5 423 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 EPSTI1Q96J88 318 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 TRIM10Q9UDY6 481 aa16.74■□□□□ 0.27
HOXC11-202ENST00000546378 SRGAP2O75044 1071 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 NCAPHQ15003 741 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 PTPROQ16827 1216 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 SARM1Q6SZW1 724 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 RBM43Q6ZSC3 357 aaKnown RBP16.73■□□□□ 0.27
HOXC11-202ENST00000546378 DIS3L2Q8IYB7 885 aaKnown RBP16.73■□□□□ 0.27
HOXC11-202ENST00000546378 NAPBQ9H115 298 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 COPRSQ9NQ92 184 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 VPS54Q9P1Q0 977 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 PCDHB6Q9Y5E3 794 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 ZSCAN12O43309 604 aa16.73■□□□□ 0.27
HOXC11-202ENST00000546378 METTL16Q86W50 562 aaKnown RBP16.73■□□□□ 0.27
HOXC11-202ENST00000546378 EYA2O00167 538 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 ANTXR2P58335 489 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 ZMYM1Q5SVZ6 1142 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 LRP10Q7Z4F1 713 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 CAGE1Q8TC20 777 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 LMO7Q8WWI1 1683 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 FAM208AQ9UK61 1670 aaKnown RBP16.72■□□□□ 0.27
HOXC11-202ENST00000546378 EPB41L2O43491 1005 aaKnown RBP16.72■□□□□ 0.27
HOXC11-202ENST00000546378 IFIT5Q13325 482 aaKnown RBP16.72■□□□□ 0.27
HOXC11-202ENST00000546378 HSP90B2PQ58FF3 399 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 IGSF22Q8N9C0 903 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 LRRC37A3O60309 1634 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 CYP2D7A0A087X1C5 515 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 VWA3AA6NCI4 1184 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 TAB2Q9NYJ8 693 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 WWC3Q9ULE0 1092 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 FAN1Q9Y2M0 1017 aa16.72■□□□□ 0.27
HOXC11-202ENST00000546378 LOC102724428A0A0B4J2F2 783 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 RANBP6O60518 1105 aaKnown RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 CAVIN2O95810 425 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 RFX5P48382 616 aaPredicted RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 SIK1P57059 783 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 EXOSC10Q01780 885 aaKnown RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 ATG9AQ7Z3C6 839 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 DZIP3Q86Y13 1208 aaKnown RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 CCDC24Q8N4L8 307 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 MAGEB6Q8N7X4 407 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 TEX13AQ9BXU3 409 aaPredicted RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 HDAC6Q9UBN7 1215 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 CBFA2T2O43439 604 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 CHMP4BP1P59074 171 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 LEKR1Q6ZMV7 388 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 JMYQ8N9B5 988 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 HOOK1Q9UJC3 728 aaKnown RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 PARP3Q9Y6F1 533 aa16.71■□□□□ 0.27
HOXC11-202ENST00000546378 USP42Q9H9J4 1324 aaKnown RBP16.71■□□□□ 0.27
HOXC11-202ENST00000546378 CDC25BP30305 580 aa16.71■□□□□ 0.26
HOXC11-202ENST00000546378 CASP14P31944 242 aa16.71■□□□□ 0.26
HOXC11-202ENST00000546378 RNASE9P60153 205 aaKnown RBP16.71■□□□□ 0.26
HOXC11-202ENST00000546378 NOM1Q5C9Z4 860 aaKnown RBP16.71■□□□□ 0.26
HOXC11-202ENST00000546378 CDCA7Q9BWT1 371 aaPredicted RBP16.71■□□□□ 0.26
HOXC11-202ENST00000546378 SEC31BQ9NQW1 1179 aa16.71■□□□□ 0.26
HOXC11-202ENST00000546378 TRMT112Q9UI30 125 aaKnown RBP16.71■□□□□ 0.26
HOXC11-202ENST00000546378 HPS5Q9UPZ3 1129 aa16.71■□□□□ 0.26
HOXC11-202ENST00000546378 JCADQ9P266 1359 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 H3BQF6 201 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 KIF2AO00139 706 aaPredicted RBP16.7■□□□□ 0.26
HOXC11-202ENST00000546378 N4BP3O15049 544 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 RBL2Q08999 1139 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 LONRF2Q1L5Z9 754 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 SDR42E1Q8WUS8 393 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 KCNB2Q92953 911 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 LLPHQ9BRT6 129 aaKnown RBP16.7■□□□□ 0.26
HOXC11-202ENST00000546378 FAM107BQ9H098 131 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 ZNF532Q9HCE3 1301 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 KIF5CO60282 957 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 MBD4O95243 580 aa16.7■□□□□ 0.26
HOXC11-202ENST00000546378 SSRP1Q08945 709 aaKnown RBP16.7■□□□□ 0.26
HOXC11-202ENST00000546378 CYP19A1P11511 503 aaPredicted RBP16.69■□□□□ 0.26
HOXC11-202ENST00000546378 BMP6P22004 513 aa16.69■□□□□ 0.26
HOXC11-202ENST00000546378 PHKA1P46020 1223 aa16.69■□□□□ 0.26
HOXC11-202ENST00000546378 NAP1L1P55209 391 aaKnown RBP16.69■□□□□ 0.26
HOXC11-202ENST00000546378 CC2D1AQ6P1N0 951 aaPredicted RBP16.69■□□□□ 0.26
HOXC11-202ENST00000546378 CTNND2Q9UQB3 1225 aa16.69■□□□□ 0.26
HOXC11-202ENST00000546378 TADA3O75528 432 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms