RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 COL5A2P05997 1499 aaPredicted RBP17.28■□□□□ 0.36
USP28-214ENST00000545540 AKNAD1Q5T1N1 836 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 KLHL34Q8N239 644 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 FBXL16Q8N461 479 aa17.28■□□□□ 0.36
USP28-214ENST00000545540 SEC31AO94979 1220 aaKnown RBP17.27■□□□□ 0.36
USP28-214ENST00000545540 TTF1Q15361 905 aaPredicted RBP17.27■□□□□ 0.36
USP28-214ENST00000545540 KRI1Q8N9T8 703 aaKnown RBP17.27■□□□□ 0.36
USP28-214ENST00000545540 CARD6Q9BX69 1037 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 RAI14Q9P0K7 980 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 DYNLL1P63167 89 aaKnown RBP17.27■□□□□ 0.36
USP28-214ENST00000545540 TOGARAM2Q6ZUX3 1019 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 JMYQ8N9B5 988 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 LPIN2Q92539 896 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 SHISA4Q96DD7 197 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 MAN1B1Q9UKM7 699 aa17.27■□□□□ 0.36
USP28-214ENST00000545540 NMT2O60551 498 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 TFRCP02786 760 aaKnown RBP17.27■□□□□ 0.35
USP28-214ENST00000545540 CYP7A1P22680 504 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 CCDC150Q8NCX0 1101 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 MED15Q96RN5 788 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 CSRNP2Q9H175 543 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 TUBE1Q9UJT0 475 aa17.27■□□□□ 0.35
USP28-214ENST00000545540 CDC25AP30304 524 aa17.26■□□□□ 0.35
USP28-214ENST00000545540 WDR24Q96S15 920 aa17.26■□□□□ 0.35
USP28-214ENST00000545540 VEGFAP15692 232 aaPredicted RBP17.26■□□□□ 0.35
USP28-214ENST00000545540 ERO1AQ96HE7 468 aa17.26■□□□□ 0.35
USP28-214ENST00000545540 IMPACTQ9P2X3 320 aa17.26■□□□□ 0.35
USP28-214ENST00000545540 TEX33O43247 280 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 SAFBQ15424 915 aaKnown RBP eCLIP17.25■□□□□ 0.35
USP28-214ENST00000545540 ZNF397Q8NF99 534 aaPredicted RBP17.25■□□□□ 0.35
USP28-214ENST00000545540 PLA2G12BQ9BX93 195 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 MAPK8IP1Q9UQF2 711 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 A0A087X0B3 334 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 POSTNQ15063 836 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 ZNF174Q15697 407 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 EEF2KMTQ96G04 330 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 TMEM87BQ96K49 555 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 V9GY48 417 aaPredicted RBP17.25■□□□□ 0.35
USP28-214ENST00000545540 ADAMTS3O15072 1205 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 MMP1P03956 469 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 SLC5A1P13866 664 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 SLC51AQ86UW1 340 aa17.25■□□□□ 0.35
USP28-214ENST00000545540 PPP6R2O75170 966 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 PLEKHA8P1O95397 391 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 GNG11P61952 73 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 TRIM22Q8IYM9 498 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 UBAC1Q9BSL1 405 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 LZTFL1Q9NQ48 299 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 ABCC6O95255 1503 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 ERICH2A1L162 156 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 BLZF1Q9H2G9 400 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.24■□□□□ 0.35
USP28-214ENST00000545540 FMNL1O95466 1100 aaPredicted RBP17.24■□□□□ 0.35
USP28-214ENST00000545540 ETF1P62495 437 aaKnown RBP17.24■□□□□ 0.35
USP28-214ENST00000545540 VSTM4Q8IW00 320 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 ZNF654Q8IZM8 581 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 FEZ1Q99689 392 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 BPIFA3Q9BQP9 254 aa17.24■□□□□ 0.35
USP28-214ENST00000545540 NIP7Q9Y221 180 aaKnown RBP eCLIP17.24■□□□□ 0.35
USP28-214ENST00000545540 MYH15Q9Y2K3 1946 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 POLR3GO15318 223 aaPredicted RBP17.23■□□□□ 0.35
USP28-214ENST00000545540 CUTAO60888 179 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 ARID4AP29374 1257 aaPredicted RBP17.23■□□□□ 0.35
USP28-214ENST00000545540 CLCN6P51797 869 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 TRIM65Q6PJ69 517 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 FANCBQ8NB91 859 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 FBXO2Q9UK22 296 aaPredicted RBP17.23■□□□□ 0.35
USP28-214ENST00000545540 NRDCO43847 1150 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 ADAMTS2O95450 1211 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 CRACR2BQ8N4Y2 399 aaPredicted RBP17.23■□□□□ 0.35
USP28-214ENST00000545540 KIF1AQ12756 1690 aa17.23■□□□□ 0.35
USP28-214ENST00000545540 FGFR2P21802 821 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 FAM47AQ5JRC9 791 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 C3orf67Q6ZVT6 689 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 REXO1L1PQ8IX06 675 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 MNS1Q8NEH6 495 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 SMARCE1Q969G3 411 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 IKBKBO14920 756 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 UQCRFS1P1P0C7P4 283 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 TNKSO95271 1327 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 ADAMTSL3P82987 1691 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 ATP6V1AP38606 617 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 MDM2Q00987 491 aaPredicted RBP17.22■□□□□ 0.35
USP28-214ENST00000545540 CHRNDQ07001 517 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 SGMS1Q86VZ5 419 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 TEX13AQ9BXU3 409 aaPredicted RBP17.22■□□□□ 0.35
USP28-214ENST00000545540 FBXO3Q9UK99 471 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 PPP2R2CQ9Y2T4 447 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 STRCP1A6NGW2 1772 aa17.22■□□□□ 0.35
USP28-214ENST00000545540 SOWAHDA6NJG2 315 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 IFNAR1P17181 557 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 TEX35Q5T0J7 233 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 UBXN4Q92575 508 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 BAG1Q99933 345 aaPredicted RBP17.21■□□□□ 0.35
USP28-214ENST00000545540 ZCCHC17Q9NP64 241 aaKnown RBP17.21■□□□□ 0.35
USP28-214ENST00000545540 AKAP11Q9UKA4 1901 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 CD44P16070 742 aaKnown RBP17.21■□□□□ 0.35
USP28-214ENST00000545540 PPARAQ07869 468 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 NUP188Q5SRE5 1749 aa17.21■□□□□ 0.35
USP28-214ENST00000545540 VWA3AA6NCI4 1184 aa17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms