RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 BTDP43251 543 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 GCLCP48506 637 aaPredicted RBP15.96■□□□□ 0.15
USP28-212ENST00000544750 TRIM32Q13049 653 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 LRIT3Q3SXY7 679 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 C7orf61Q8IZ16 206 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 OSBPL5Q9H0X9 879 aaPredicted RBP15.96■□□□□ 0.15
USP28-212ENST00000544750 TAOK2Q9UL54 1235 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 PA2G4Q9UQ80 394 aaKnown RBP15.96■□□□□ 0.15
USP28-212ENST00000544750 UNC80Q8N2C7 3258 aa15.96■□□□□ 0.15
USP28-212ENST00000544750 PICALMQ13492 652 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 RRP1BQ14684 758 aaKnown RBP15.95■□□□□ 0.14
USP28-212ENST00000544750 SH3D19Q5HYK7 790 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 DZIP1Q86YF9 867 aaKnown RBP15.95■□□□□ 0.14
USP28-212ENST00000544750 SLF2Q8IX21 1173 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 NBPF3Q9H094 633 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 COPRSQ9NQ92 184 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 OGDHLQ9ULD0 1010 aa15.95■□□□□ 0.14
USP28-212ENST00000544750 ZMYND8Q9ULU4 1186 aaPredicted RBP15.95■□□□□ 0.14
USP28-212ENST00000544750 FAM196BA6NMK8 535 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 SPP2Q13103 211 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 MAP3K21Q5TCX8 1036 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 ZNF280CQ8ND82 737 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 ASCC2Q9H1I8 757 aaPredicted RBP15.94■□□□□ 0.14
USP28-212ENST00000544750 HMX1Q9NP08 348 aaPredicted RBP15.94■□□□□ 0.14
USP28-212ENST00000544750 MORF4L1Q9UBU8 362 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 ABCF2Q9UG63 623 aa15.94■□□□□ 0.14
USP28-212ENST00000544750 MYO5AQ9Y4I1 1855 aaKnown RBP15.94■□□□□ 0.14
USP28-212ENST00000544750 UBTFL1P0CB47 393 aaPredicted RBP15.93■□□□□ 0.14
USP28-212ENST00000544750 MAGEA10P43363 369 aaPredicted RBP15.93■□□□□ 0.14
USP28-212ENST00000544750 HMGCS2P54868 508 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 TIMM10P62072 90 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 MECOMQ03112 1051 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 ALDH1L2Q3SY69 923 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 SPTY2D1Q68D10 685 aaPredicted RBP15.93■□□□□ 0.14
USP28-212ENST00000544750 Q7L0L9 218 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 FAM9BQ8IZU0 186 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 DEFB123Q8N688 67 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 TRIB2Q92519 343 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 TBC1D2Q9BYX2 928 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.93■□□□□ 0.14
USP28-212ENST00000544750 DNAH12Q6ZR08 3092 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 PFASO15067 1338 aa15.93■□□□□ 0.14
USP28-212ENST00000544750 CAP2P40123 477 aa15.92■□□□□ 0.14
USP28-212ENST00000544750 TDHQ8IZJ6 230 aa15.92■□□□□ 0.14
USP28-212ENST00000544750 C11orf49Q9H6J7 331 aa15.92■□□□□ 0.14
USP28-212ENST00000544750 MTMR10Q9NXD2 777 aa15.92■□□□□ 0.14
USP28-212ENST00000544750 STXBP5LQ9Y2K9 1186 aa15.92■□□□□ 0.14
USP28-212ENST00000544750 LAMA2P24043 3122 aaKnown RBP15.92■□□□□ 0.14
USP28-212ENST00000544750 MAST2Q6P0Q8 1798 aa15.91■□□□□ 0.14
USP28-212ENST00000544750 MAP4K4O95819 1239 aaPredicted RBP15.91■□□□□ 0.14
USP28-212ENST00000544750 SYN1P17600 705 aa15.91■□□□□ 0.14
USP28-212ENST00000544750 PABPC4Q13310 644 aaKnown RBP eCLIP15.91■□□□□ 0.14
USP28-212ENST00000544750 ERICH6Q7L0X2 663 aa15.91■□□□□ 0.14
USP28-212ENST00000544750 NSUN4Q96CB9 384 aaKnown RBP15.91■□□□□ 0.14
USP28-212ENST00000544750 XAGE2Q96GT9 111 aa15.91■□□□□ 0.14
USP28-212ENST00000544750 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.91■□□□□ 0.14
USP28-212ENST00000544750 A0A1B0GUL7 405 aa15.9■□□□□ 0.14
USP28-212ENST00000544750 USP17L5A8MUK1 530 aa15.9■□□□□ 0.14
USP28-212ENST00000544750 E9PSI1 815 aa15.9■□□□□ 0.14
USP28-212ENST00000544750 COL6A1P12109 1028 aa15.9■□□□□ 0.14
USP28-212ENST00000544750 SLFN5Q08AF3 891 aa15.9■□□□□ 0.14
USP28-212ENST00000544750 XRCC5P13010 732 aaKnown RBP15.89■□□□□ 0.13
USP28-212ENST00000544750 HOXA7P31268 230 aaPredicted RBP15.89■□□□□ 0.13
USP28-212ENST00000544750 USP6NLQ92738 828 aa15.89■□□□□ 0.13
USP28-212ENST00000544750 WDR18Q9BV38 432 aa15.89■□□□□ 0.13
USP28-212ENST00000544750 TXNRD2Q9NNW7 524 aa15.89■□□□□ 0.13
USP28-212ENST00000544750 HMG20BQ9P0W2 317 aa15.89■□□□□ 0.13
USP28-212ENST00000544750 PEX10O60683 326 aa15.88■□□□□ 0.13
USP28-212ENST00000544750 PRKAR2AP13861 404 aaKnown RBP15.88■□□□□ 0.13
USP28-212ENST00000544750 CYP2B6P20813 491 aa15.88■□□□□ 0.13
USP28-212ENST00000544750 JAG1P78504 1218 aa15.88■□□□□ 0.13
USP28-212ENST00000544750 PI16Q6UXB8 463 aa15.88■□□□□ 0.13
USP28-212ENST00000544750 P2RX7Q99572 595 aaKnown RBP15.88■□□□□ 0.13
USP28-212ENST00000544750 HERC5Q9UII4 1024 aaKnown RBP15.88■□□□□ 0.13
USP28-212ENST00000544750 LTBP2Q14767 1821 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 LDHCP07864 332 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 BACE1P56817 501 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 TFCP2Q12800 502 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 MVPQ14764 893 aaKnown RBP15.87■□□□□ 0.13
USP28-212ENST00000544750 LHX8Q68G74 356 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 POTEEQ6S8J3 1075 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 TBC1D9Q6ZT07 1266 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 METTL16Q86W50 562 aaKnown RBP15.87■□□□□ 0.13
USP28-212ENST00000544750 MEIS3Q99687 375 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 NUDT12Q9BQG2 462 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 UBE2OQ9C0C9 1292 aaKnown RBP15.87■□□□□ 0.13
USP28-212ENST00000544750 DNAJC18Q9H819 358 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 AS3MTQ9HBK9 375 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 MYH1P12882 1939 aa15.87■□□□□ 0.13
USP28-212ENST00000544750 ARID4AP29374 1257 aaPredicted RBP15.86■□□□□ 0.13
USP28-212ENST00000544750 HERVK_113P62684 666 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 GSTO1P78417 241 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 CACNB2Q08289 660 aaPredicted RBP15.86■□□□□ 0.13
USP28-212ENST00000544750 MTX1Q13505 466 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 MTMR2Q13614 643 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 Q3C1V9 767 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 TRMT2AQ8IZ69 625 aaKnown RBP15.86■□□□□ 0.13
USP28-212ENST00000544750 SPATA5Q8NB90 893 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 SOCS4Q8WXH5 440 aa15.86■□□□□ 0.13
USP28-212ENST00000544750 SMC4Q9NTJ3 1288 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms