RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FAM237AA0A1B0GTK4 181 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 CCDC196A0A1B0GTZ2 297 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 SMIM22K7EJ46 135 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 NLRP12P59046 1061 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 SEC23AQ15436 765 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 VPS72Q15906 364 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 FBXO33Q7Z6M2 555 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 FANCBQ8NB91 859 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 MYRIPQ8NFW9 859 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 ZNF384Q8TF68 577 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 CACTINQ8WUQ7 758 aaKnown RBP20.82■□□□□ 0.92
VIM-209ENST00000544301 NARFQ9UHQ1 456 aa20.82■□□□□ 0.92
VIM-209ENST00000544301 RC3H1Q5TC82 1133 aaKnown RBP20.81■□□□□ 0.92
VIM-209ENST00000544301 RESP18Q5W5W9 173 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 NYXQ9GZU5 481 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 BTBD18B2RXH4 712 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 CUTAO60888 179 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 DEXIO95424 95 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 HSP90AA2PQ14568 343 aaPredicted RBP20.81■□□□□ 0.92
VIM-209ENST00000544301 SAFBQ15424 915 aaKnown RBP eCLIP20.81■□□□□ 0.92
VIM-209ENST00000544301 CMTR1Q8N1G2 835 aaKnown RBP20.81■□□□□ 0.92
VIM-209ENST00000544301 CCDC82Q8N4S0 544 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 NUP133Q8WUM0 1156 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 CLIC6Q96NY7 704 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 BRIP1Q9BX63 1249 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 SRP68Q9UHB9 627 aaKnown RBP20.81■□□□□ 0.92
VIM-209ENST00000544301 KCNJ14Q9UNX9 436 aa20.81■□□□□ 0.92
VIM-209ENST00000544301 TNKSO95271 1327 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 BIN1O00499 593 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 RPS6KA4O75676 772 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 KLRK1P26718 216 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 RPS8P62241 208 aaKnown RBP20.8■□□□□ 0.92
VIM-209ENST00000544301 DIS3L2Q8IYB7 885 aaKnown RBP20.8■□□□□ 0.92
VIM-209ENST00000544301 SETDB2Q96T68 719 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 SEMA3EO15041 775 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 NLRP3Q96P20 1036 aa20.8■□□□□ 0.92
VIM-209ENST00000544301 TOB1P50616 345 aaPredicted RBP20.79■□□□□ 0.92
VIM-209ENST00000544301 NGLY1Q96IV0 654 aa20.79■□□□□ 0.92
VIM-209ENST00000544301 C8orf37Q96NL8 207 aa20.79■□□□□ 0.92
VIM-209ENST00000544301 FOXP1Q9H334 677 aaPredicted RBP20.79■□□□□ 0.92
VIM-209ENST00000544301 CYP2D7A0A087X1C5 515 aa20.78■□□□□ 0.92
VIM-209ENST00000544301 TOM1O60784 492 aa20.78■□□□□ 0.92
VIM-209ENST00000544301 NBPF5PQ86XG9 351 aaPredicted RBP20.78■□□□□ 0.92
VIM-209ENST00000544301 TUBE1Q9UJT0 475 aa20.78■□□□□ 0.92
VIM-209ENST00000544301 DUOX1Q9NRD9 1551 aa20.78■□□□□ 0.92
VIM-209ENST00000544301 RBM10P98175 930 aaKnown RBP20.78■□□□□ 0.92
VIM-209ENST00000544301 LRRC8AQ8IWT6 810 aa20.78■□□□□ 0.92
VIM-209ENST00000544301 ENAHQ8N8S7 591 aaPredicted RBP20.78■□□□□ 0.92
VIM-209ENST00000544301 NSUN4Q96CB9 384 aaKnown RBP20.78■□□□□ 0.92
VIM-209ENST00000544301 ZSCAN10Q96SZ4 725 aaPredicted RBP20.78■□□□□ 0.92
VIM-209ENST00000544301 BAZ2AQ9UIF9 1905 aaKnown RBP20.77■□□□□ 0.92
VIM-209ENST00000544301 PPP2R5BQ15173 497 aa20.77■□□□□ 0.92
VIM-209ENST00000544301 KRI1Q8N9T8 703 aaKnown RBP20.77■□□□□ 0.92
VIM-209ENST00000544301 COL24A1Q17RW2 1714 aa20.77■□□□□ 0.92
VIM-209ENST00000544301 PDS5AQ29RF7 1337 aaKnown RBP20.77■□□□□ 0.92
VIM-209ENST00000544301 ZPR1O75312 459 aa20.77■□□□□ 0.91
VIM-209ENST00000544301 FGRP09769 529 aa20.77■□□□□ 0.91
VIM-209ENST00000544301 CTR9Q6PD62 1173 aa20.77■□□□□ 0.91
VIM-209ENST00000544301 ANKRD2Q9GZV1 360 aa20.77■□□□□ 0.91
VIM-209ENST00000544301 GNPATO15228 680 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 NEMFO60524 1076 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 MECOMQ03112 1051 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 ARID5BQ14865 1188 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 RILPL1Q5EBL4 403 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 RNF26Q9BY78 433 aaPredicted RBP20.76■□□□□ 0.91
VIM-209ENST00000544301 TFCP2L1Q9NZI6 479 aa20.76■□□□□ 0.91
VIM-209ENST00000544301 HIBADHP31937 336 aaKnown RBP20.75■□□□□ 0.91
VIM-209ENST00000544301 GTF2F1P35269 517 aaKnown RBP eCLIP20.75■□□□□ 0.91
VIM-209ENST00000544301 NR5A1Q13285 461 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 NCAPHQ15003 741 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 CCDC24Q8N4L8 307 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 KCNH3Q9ULD8 1083 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 MYH2Q9UKX2 1941 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 SMTNL1A8MU46 457 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 PCP11498 1178 aaKnown RBP20.75■□□□□ 0.91
VIM-209ENST00000544301 LONRF3Q496Y0 759 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 ISM2Q6H9L7 571 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 TPTE2Q6XPS3 522 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 FAM13BQ9NYF5 915 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 BTAF1O14981 1849 aa20.75■□□□□ 0.91
VIM-209ENST00000544301 PRDM1O75626 825 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 PNOCQ13519 176 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 IFIT1BQ5T764 474 aaKnown RBP20.74■□□□□ 0.91
VIM-209ENST00000544301 KRBA2Q6ZNG9 492 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 FILIP1Q7Z7B0 1213 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 OXER1Q8TDS5 423 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 USP17L12C9JPN9 530 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 USP17L21D6R901 530 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 FUT2Q10981 343 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 CATIPQ7Z7H3 387 aa20.74■□□□□ 0.91
VIM-209ENST00000544301 METTL16Q86W50 562 aaKnown RBP20.74■□□□□ 0.91
VIM-209ENST00000544301 FBXO2Q9UK22 296 aaPredicted RBP20.74■□□□□ 0.91
VIM-209ENST00000544301 IKBKBO14920 756 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 PTPREP23469 700 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 TM4SF1P30408 202 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 TPM4P67936 248 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 AMIGO3Q86WK7 504 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 IQCA1Q86XH1 822 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 SHISA4Q96DD7 197 aa20.73■□□□□ 0.91
VIM-209ENST00000544301 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms