RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SEC62Q99442 399 aaKnown RBP20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 SWAP70Q9UH65 585 aa20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 SERPINB13Q9UIV8 391 aa20.9■□□□□ 0.94
CLSTN3-210ENST00000540931 SGSM2O43147 1006 aa20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 TTLL12Q14166 644 aaPredicted RBP20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 NBPF12Q5TAG4 269 aaPredicted RBP20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 CST9Q5W186 159 aa20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 METTL16Q86W50 562 aaKnown RBP20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 CAPNS2Q96L46 248 aa20.89■□□□□ 0.93
CLSTN3-210ENST00000540931 TRAF5O00463 557 aa20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 HSPD1P10809 573 aaKnown RBP20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 PCP11498 1178 aaKnown RBP20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 SLFNL1Q499Z3 407 aa20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 ZNF408Q9H9D4 720 aa20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.88■□□□□ 0.93
CLSTN3-210ENST00000540931 PAPPA2Q9BXP8 1791 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 THSD7BQ9C0I4 1608 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 DDTLA6NHG4 134 aaPredicted RBP20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 REC8O95072 547 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 C12orf60Q5U649 245 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 ANKRD13AQ8IZ07 590 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 ESYT1Q9BSJ8 1104 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 PALD1Q9ULE6 856 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 CDK5RAP2Q96SN8 1893 aa20.87■□□□□ 0.93
CLSTN3-210ENST00000540931 MYH1P12882 1939 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 USP17L12C9JPN9 530 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 USP17L21D6R901 530 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 PRKAB2O43741 272 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 CHGBP05060 677 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 ECE1P42892 770 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 PDE4BQ07343 736 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 CYP4F22Q6NT55 531 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 CTR9Q6PD62 1173 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 TBC1D2Q9BYX2 928 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 CSADQ9Y600 493 aa20.86■□□□□ 0.93
CLSTN3-210ENST00000540931 CTNND1O60716 968 aaKnown RBP20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 MAP3K9P80192 1104 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 ZNF589Q86UQ0 364 aaPredicted RBP20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 SKAP1Q86WV1 359 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 ZFPM1Q8IX07 1006 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 CCDC17Q96LX7 622 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 SAP30BPQ9UHR5 308 aaKnown RBP20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 ZNF112Q9UJU3 913 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 ANGEL1Q9UNK9 670 aaKnown RBP20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 TLL2Q9Y6L7 1015 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 U3KPZ7 1027 aaPredicted RBP20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 NAV1Q8NEY1 1877 aa20.85■□□□□ 0.93
CLSTN3-210ENST00000540931 IMMTQ16891 758 aaKnown RBP20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 PRAMEF18Q5VWM3 479 aa20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 CCDC129Q6ZRS4 1044 aa20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 SH3BP5LQ7L8J4 393 aa20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 RNF41Q9H4P4 317 aaPredicted RBP20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 ANAPC4Q9UJX5 808 aa20.84■□□□□ 0.93
CLSTN3-210ENST00000540931 USP2O75604 605 aaPredicted RBP20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 FGAP02671 866 aa20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 PPP4R3BQ5MIZ7 849 aa20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 LDLRAD1Q5T700 205 aa20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 PAXIP1Q6ZW49 1069 aaPredicted RBP20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 SAPCD2Q86UD0 394 aa20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 CCDC102AQ96A19 550 aa20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 SCAF8Q9UPN6 1271 aaKnown RBP20.83■□□□□ 0.93
CLSTN3-210ENST00000540931 ROBO3Q96MS0 1386 aa20.83■□□□□ 0.92
CLSTN3-210ENST00000540931 MINDY4BA8MYZ0 360 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 ZNF213O14771 459 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 SLC34A2O95436 690 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 HUNKP57058 714 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 RNF20Q5VTR2 975 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 C16orf86Q6ZW13 317 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 WRNIP1Q96S55 665 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 BEGAINQ9BUH8 593 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 CABP5Q9NP86 173 aa20.82■□□□□ 0.92
CLSTN3-210ENST00000540931 ASNSP08243 561 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 MAP2K2P36507 400 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 PLCD1P51178 756 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 GABPAQ06546 454 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 PPARAQ07869 468 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 GRM1Q13255 1194 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 NOL9Q5SY16 702 aaKnown RBP20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 TATDN1Q6P1N9 297 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 MIGA2Q7L4E1 593 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 MAP4K1Q92918 833 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 SLC10A4Q96EP9 437 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 MKNK2Q9HBH9 465 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 EPB41L4AQ9HCS5 686 aaPredicted RBP20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 PICK1Q9NRD5 415 aa20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 DDX60LQ5H9U9 1706 aaKnown RBP20.81■□□□□ 0.92
CLSTN3-210ENST00000540931 RGS19P49795 217 aa20.8■□□□□ 0.92
CLSTN3-210ENST00000540931 CERKLQ49MI3 558 aaPredicted RBP20.8■□□□□ 0.92
CLSTN3-210ENST00000540931 REM2Q8IYK8 340 aaPredicted RBP20.8■□□□□ 0.92
CLSTN3-210ENST00000540931 ANO2Q9NQ90 1003 aa20.8■□□□□ 0.92
CLSTN3-210ENST00000540931 PHF20L1A8MW92 1017 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 AOC2O75106 756 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 CAP2P40123 477 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 VPS53Q5VIR6 699 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 RGMBQ6NW40 437 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 SCYL3Q8IZE3 742 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 ZNF444Q8N0Y2 327 aaPredicted RBP20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 CNNM2Q9H8M5 875 aa20.79■□□□□ 0.92
CLSTN3-210ENST00000540931 SSC5DA1L4H1 1573 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms