RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MAPKAPK5Q8IW41 473 aa14.04□□□□□ -0.16
RTN3-209ENST00000538995 DCTPP1Q9H773 170 aa14.04□□□□□ -0.16
RTN3-209ENST00000538995 HPS5Q9UPZ3 1129 aa14.04□□□□□ -0.16
RTN3-209ENST00000538995 AFG3L2Q9Y4W6 797 aa14.04□□□□□ -0.16
RTN3-209ENST00000538995 DOCK1Q14185 1865 aa14.04□□□□□ -0.16
RTN3-209ENST00000538995 GOLIM4O00461 696 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 HLA-DOAP06340 250 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 PDE6AP16499 860 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 CAP2P40123 477 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 DYNLL1P63167 89 aaKnown RBP14.03□□□□□ -0.16
RTN3-209ENST00000538995 FOXP4Q8IVH2 680 aaPredicted RBP14.03□□□□□ -0.16
RTN3-209ENST00000538995 MIGA1Q8NAN2 632 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 CD99L2Q8TCZ2 262 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 PARK7Q99497 189 aaKnown RBP14.03□□□□□ -0.16
RTN3-209ENST00000538995 DNAJC2Q99543 621 aaKnown RBP14.03□□□□□ -0.16
RTN3-209ENST00000538995 GINM1Q9NU53 330 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 SLC45A1Q9Y2W3 748 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 TRIM17Q9Y577 477 aa14.03□□□□□ -0.16
RTN3-209ENST00000538995 HTTP42858 3142 aa14.02□□□□□ -0.16
RTN3-209ENST00000538995 FOCADQ5VW36 1801 aa14.02□□□□□ -0.16
RTN3-209ENST00000538995 ADGRA2Q96PE1 1338 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 FAM196BA6NMK8 535 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 PDHXO00330 501 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 SLURP2P0DP57 97 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 RGS19P49795 217 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 SLC9C2Q5TAH2 1124 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 HAUS7Q99871 368 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 RIOK1Q9BRS2 568 aaKnown RBP14.02□□□□□ -0.17
RTN3-209ENST00000538995 TRIM34Q9BYJ4 488 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 EFCC1Q9HA90 598 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 PAG1Q9NWQ8 432 aa14.02□□□□□ -0.17
RTN3-209ENST00000538995 MAGEB6P1A0A0J9YX57 407 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 USP5P45974 858 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 GPAT2Q6NUI2 795 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 CRACR2BQ8N4Y2 399 aaPredicted RBP14.01□□□□□ -0.17
RTN3-209ENST00000538995 GPATCH3Q96I76 525 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.01□□□□□ -0.17
RTN3-209ENST00000538995 EHD4Q9H223 541 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 BOLA2Q9H3K6 86 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 DNAJC18Q9H819 358 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 PALD1Q9ULE6 856 aa14.01□□□□□ -0.17
RTN3-209ENST00000538995 MYO5AQ9Y4I1 1855 aaKnown RBP14□□□□□ -0.17
RTN3-209ENST00000538995 ZNF532Q9HCE3 1301 aa14□□□□□ -0.17
RTN3-209ENST00000538995 TCRBV5S4A2TA0A5A2 114 aa14□□□□□ -0.17
RTN3-209ENST00000538995 TRIM75PA6NK02 468 aa14□□□□□ -0.17
RTN3-209ENST00000538995 USP17L5A8MUK1 530 aa14□□□□□ -0.17
RTN3-209ENST00000538995 GNRH1P01148 92 aa14□□□□□ -0.17
RTN3-209ENST00000538995 ASNSP08243 561 aa14□□□□□ -0.17
RTN3-209ENST00000538995 KIF22Q14807 665 aa14□□□□□ -0.17
RTN3-209ENST00000538995 C17orf99Q6UX52 265 aa14□□□□□ -0.17
RTN3-209ENST00000538995 PROCA1Q8NCQ7 364 aaPredicted RBP14□□□□□ -0.17
RTN3-209ENST00000538995 ZNF280CQ8ND82 737 aa14□□□□□ -0.17
RTN3-209ENST00000538995 YTHDC1Q96MU7 727 aaKnown RBP14□□□□□ -0.17
RTN3-209ENST00000538995 CRNKL1Q9BZJ0 848 aaKnown RBP14□□□□□ -0.17
RTN3-209ENST00000538995 AS3MTQ9HBK9 375 aa14□□□□□ -0.17
RTN3-209ENST00000538995 ECHDC1Q9NTX5 307 aa14□□□□□ -0.17
RTN3-209ENST00000538995 PTPN22Q9Y2R2 807 aa14□□□□□ -0.17
RTN3-209ENST00000538995 SIPA1L1O43166 1804 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 SMARCA5O60264 1052 aaPredicted RBP13.99□□□□□ -0.17
RTN3-209ENST00000538995 ADD2P35612 726 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 LACTBP83111 547 aaPredicted RBP13.99□□□□□ -0.17
RTN3-209ENST00000538995 AAMPQ13685 434 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 RRP1BQ14684 758 aaKnown RBP13.99□□□□□ -0.17
RTN3-209ENST00000538995 TTC6Q86TZ1 520 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 WDR18Q9BV38 432 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 BCL11AQ9H165 835 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.99□□□□□ -0.17
RTN3-209ENST00000538995 SAP30BPQ9UHR5 308 aaKnown RBP13.99□□□□□ -0.17
RTN3-209ENST00000538995 SERPINB13Q9UIV8 391 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 TAOK2Q9UL54 1235 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 AGTPBP1Q9UPW5 1226 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 PCDHB15Q9Y5E8 787 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 CDK5RAP2Q96SN8 1893 aa13.99□□□□□ -0.17
RTN3-209ENST00000538995 PRMT2P55345 433 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 UBE3CQ15386 1083 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 SH3D19Q5HYK7 790 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 ZSCAN25Q6NSZ9 544 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 GADL1Q6ZQY3 521 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 EDC3Q96F86 508 aaKnown RBP13.98□□□□□ -0.17
RTN3-209ENST00000538995 PNMA3Q9UL41 463 aa13.98□□□□□ -0.17
RTN3-209ENST00000538995 DDX60LQ5H9U9 1706 aaKnown RBP13.98□□□□□ -0.17
RTN3-209ENST00000538995 PHIPQ8WWQ0 1821 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 BCRP11274 1271 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 CAP1Q01518 475 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 SPP2Q13103 211 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 PABPC4Q13310 644 aaKnown RBP eCLIP13.97□□□□□ -0.17
RTN3-209ENST00000538995 TATDN1Q6P1N9 297 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 CCDC84Q86UT8 332 aaPredicted RBP13.97□□□□□ -0.17
RTN3-209ENST00000538995 CPA4Q9UI42 421 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 ZBTB21Q9ULJ3 1066 aa13.97□□□□□ -0.17
RTN3-209ENST00000538995 PTPRFP10586 1907 aa13.96□□□□□ -0.17
RTN3-209ENST00000538995 CYP2C8P10632 490 aa13.96□□□□□ -0.17
RTN3-209ENST00000538995 MLLT1Q03111 559 aaPredicted RBP13.96□□□□□ -0.17
RTN3-209ENST00000538995 LCORLQ8N3X6 602 aa13.96□□□□□ -0.17
RTN3-209ENST00000538995 ARMC5Q96C12 935 aa13.96□□□□□ -0.17
RTN3-209ENST00000538995 CRBNQ96SW2 442 aa13.96□□□□□ -0.17
RTN3-209ENST00000538995 LOC285556D6RIA3 1793 aa13.96□□□□□ -0.18
RTN3-209ENST00000538995 TTC41PQ6P2S7 1318 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 C19orf81C9J6K1 198 aa13.95□□□□□ -0.18
RTN3-209ENST00000538995 MBD4O95243 580 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms