RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 NEFLP07196 543 aa27.36■■□□□ 1.97
SFSWAP-204ENST00000535399 FOXP4Q8IVH2 680 aaPredicted RBP27.36■■□□□ 1.97
SFSWAP-204ENST00000535399 REM2Q8IYK8 340 aaPredicted RBP27.36■■□□□ 1.97
SFSWAP-204ENST00000535399 DNAJC18Q9H819 358 aa27.36■■□□□ 1.97
SFSWAP-204ENST00000535399 FOCADQ5VW36 1801 aa27.36■■□□□ 1.97
SFSWAP-204ENST00000535399 HLA-DOAP06340 250 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 SLC4A8Q2Y0W8 1093 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 ZMYM1Q5SVZ6 1142 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 ERO1BQ86YB8 467 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 ATP8A2Q9NTI2 1148 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 MYH7P12883 1935 aa27.35■■□□□ 1.97
SFSWAP-204ENST00000535399 M0R2C6 588 aa27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 CTNND1O60716 968 aaKnown RBP27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 RRP1BQ14684 758 aaKnown RBP27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 SCYL3Q8IZE3 742 aa27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 OTUD5Q96G74 571 aa27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 SLC4A4Q9Y6R1 1079 aa27.34■■□□□ 1.97
SFSWAP-204ENST00000535399 MANSC4A6NHS7 340 aaPredicted RBP27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 FOXN1O15353 648 aa27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 TM4SF4P48230 202 aa27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 CENPQQ7L2Z9 268 aaPredicted RBP27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 TTC6Q86TZ1 520 aa27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 SEC62Q99442 399 aaKnown RBP27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 MCM9Q9NXL9 1143 aa27.33■■□□□ 1.97
SFSWAP-204ENST00000535399 TRIM6-TRIM34B2RNG4 842 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 GPAA1O43292 621 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 PLCD1P51178 756 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 TICAM2Q86XR7 235 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 EHD4Q9H223 541 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 SIPA1L1O43166 1804 aa27.32■■□□□ 1.96
SFSWAP-204ENST00000535399 POLR3DP05423 398 aaPredicted RBP27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 PPATQ06203 517 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 SREBF2Q12772 1141 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 PPIL2Q13356 520 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 CRACR2BQ8N4Y2 399 aaPredicted RBP27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 RILPL2Q969X0 211 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 MS4A4AQ96JQ5 239 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 BEGAINQ9BUH8 593 aa27.31■■□□□ 1.96
SFSWAP-204ENST00000535399 CYP2D6P10635 497 aa27.3■■□□□ 1.96
SFSWAP-204ENST00000535399 EVX2Q03828 476 aa27.3■■□□□ 1.96
SFSWAP-204ENST00000535399 PICK1Q9NRD5 415 aa27.3■■□□□ 1.96
SFSWAP-204ENST00000535399 SERPINB13Q9UIV8 391 aa27.3■■□□□ 1.96
SFSWAP-204ENST00000535399 DDX60LQ5H9U9 1706 aaKnown RBP27.3■■□□□ 1.96
SFSWAP-204ENST00000535399 TESPA1A2RU30 521 aaPredicted RBP27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 GSG1L2A8MUP6 293 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 IRF6O14896 467 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 CA12O43570 354 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 PTPRAP18433 802 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 CAP2P40123 477 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 TRIM34Q9BYJ4 488 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 RNF186Q9NXI6 227 aa27.29■■□□□ 1.96
SFSWAP-204ENST00000535399 INHBEP58166 350 aa27.28■■□□□ 1.96
SFSWAP-204ENST00000535399 GABPAQ06546 454 aa27.28■■□□□ 1.96
SFSWAP-204ENST00000535399 TTC22Q5TAA0 569 aa27.28■■□□□ 1.96
SFSWAP-204ENST00000535399 FRMD4AQ9P2Q2 1039 aaPredicted RBP27.28■■□□□ 1.96
SFSWAP-204ENST00000535399 GSPT1P15170 499 aaKnown RBP27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 GNAT2P19087 354 aa27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 GTF2A2P52657 109 aa27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 GIMAP6Q6P9H5 292 aa27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 CCDC136Q96JN2 1154 aa27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 KCNH4Q9UQ05 1017 aa27.27■■□□□ 1.96
SFSWAP-204ENST00000535399 USP17L12C9JPN9 530 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 USP17L21D6R901 530 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 HSPA8P11142 646 aaKnown RBP27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 CTCFP49711 727 aaPredicted RBP27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 JAG1P78504 1218 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 TATDN1Q6P1N9 297 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 CCDC129Q6ZRS4 1044 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 BRI3BPQ8WY22 251 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 DDRGK1Q96HY6 314 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 FAM227BQ96M60 508 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 PTPN18Q99952 460 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 EPB41L4AQ9HCS5 686 aaPredicted RBP27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 HELLSQ9NRZ9 838 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 SAGE1Q9NXZ1 904 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 ZHX2Q9Y6X8 837 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 MYH1P12882 1939 aa27.26■■□□□ 1.95
SFSWAP-204ENST00000535399 NAV1Q8NEY1 1877 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 CYP2D7A0A087X1C5 515 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 A0A0D9SFI3 127 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 IGF2BP3O00425 579 aaKnown RBP eCLIP27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 TRPA1O75762 1119 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 SDSP20132 328 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 SNAPC2Q13487 334 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 C12orf60Q5U649 245 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 CTR9Q6PD62 1173 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 CCDC84Q86UT8 332 aaPredicted RBP27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 IFNL1Q8IU54 200 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 TSKSQ9UJT2 592 aa27.25■■□□□ 1.95
SFSWAP-204ENST00000535399 PATL2C9JE40 543 aaKnown RBP27.24■■□□□ 1.95
SFSWAP-204ENST00000535399 SMIM22K7EJ46 135 aa27.24■■□□□ 1.95
SFSWAP-204ENST00000535399 SHMT1P34896 483 aa27.24■■□□□ 1.95
SFSWAP-204ENST00000535399 SHROOM1Q2M3G4 852 aaPredicted RBP27.24■■□□□ 1.95
SFSWAP-204ENST00000535399 AFG3L2Q9Y4W6 797 aa27.24■■□□□ 1.95
SFSWAP-204ENST00000535399 CCL15-CCL14A0A0B4J2E2 113 aa27.23■■□□□ 1.95
SFSWAP-204ENST00000535399 CXCL11O14625 94 aa27.23■■□□□ 1.95
SFSWAP-204ENST00000535399 NMIQ13287 307 aaPredicted RBP27.23■■□□□ 1.95
SFSWAP-204ENST00000535399 CCL15Q16663 113 aa27.23■■□□□ 1.95
SFSWAP-204ENST00000535399 SBK1Q52WX2 424 aa27.23■■□□□ 1.95
SFSWAP-204ENST00000535399 FOXP2O15409 715 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms