RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 USP2O75604 605 aaPredicted RBP18.28■□□□□ 0.52
LSM1-203ENST00000520755 REC8O95072 547 aa18.28■□□□□ 0.52
LSM1-203ENST00000520755 HUNKP57058 714 aa18.28■□□□□ 0.52
LSM1-203ENST00000520755 FKBP1BP68106 108 aa18.28■□□□□ 0.52
LSM1-203ENST00000520755 IFNL3Q8IZI9 196 aa18.28■□□□□ 0.52
LSM1-203ENST00000520755 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.28■□□□□ 0.52
LSM1-203ENST00000520755 TLL2Q9Y6L7 1015 aa18.28■□□□□ 0.52
LSM1-203ENST00000520755 FAM196BA6NMK8 535 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 SMIM22K7EJ46 135 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 CYP2D6P10635 497 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 IREB2P48200 963 aaKnown RBP18.27■□□□□ 0.52
LSM1-203ENST00000520755 TDO2P48775 406 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 EVX2Q03828 476 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 ALX1Q15699 326 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 SAPCD2Q86UD0 394 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 CRACR2BQ8N4Y2 399 aaPredicted RBP18.27■□□□□ 0.52
LSM1-203ENST00000520755 USP26Q9BXU7 913 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 TRIM34Q9BYJ4 488 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 ZNF341Q9BYN7 854 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 PI4KBQ9UBF8 816 aa18.27■□□□□ 0.52
LSM1-203ENST00000520755 RBM8AQ9Y5S9 174 aaKnown RBP18.27■□□□□ 0.52
LSM1-203ENST00000520755 GREB1LQ9C091 1923 aaPredicted RBP18.27■□□□□ 0.51
LSM1-203ENST00000520755 FGAP02671 866 aa18.26■□□□□ 0.51
LSM1-203ENST00000520755 PLCD1P51178 756 aa18.26■□□□□ 0.51
LSM1-203ENST00000520755 TTC6Q86TZ1 520 aa18.26■□□□□ 0.51
LSM1-203ENST00000520755 AMOTL1Q8IY63 956 aa18.26■□□□□ 0.51
LSM1-203ENST00000520755 NACAP1Q9BZK3 213 aa18.26■□□□□ 0.51
LSM1-203ENST00000520755 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.26■□□□□ 0.51
LSM1-203ENST00000520755 DOCK1Q14185 1865 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 CYP2D7A0A087X1C5 515 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 USP17L12C9JPN9 530 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 USP17L21D6R901 530 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 GIMAP6Q6P9H5 292 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 KIAA1211Q6ZU35 1233 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 PAXIP1Q6ZW49 1069 aaPredicted RBP18.25■□□□□ 0.51
LSM1-203ENST00000520755 KLRG1Q96E93 195 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 WRNIP1Q96S55 665 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 NBPF3Q9H094 633 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 NAPBQ9H115 298 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 TAF6LQ9Y6J9 622 aa18.25■□□□□ 0.51
LSM1-203ENST00000520755 MINDY4BA8MYZ0 360 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 EPB41L2O43491 1005 aaKnown RBP18.24■□□□□ 0.51
LSM1-203ENST00000520755 TBC1D12O60347 775 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 NECTIN1Q15223 517 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 MAP3K11Q16584 847 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 CTR9Q6PD62 1173 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 FOXP4Q8IVH2 680 aaPredicted RBP18.24■□□□□ 0.51
LSM1-203ENST00000520755 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.24■□□□□ 0.51
LSM1-203ENST00000520755 ARPP21Q9UBL0 812 aaPredicted RBP18.24■□□□□ 0.51
LSM1-203ENST00000520755 HERC5Q9UII4 1024 aaKnown RBP18.24■□□□□ 0.51
LSM1-203ENST00000520755 SERPINB13Q9UIV8 391 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 U3KPZ7 1027 aaPredicted RBP18.24■□□□□ 0.51
LSM1-203ENST00000520755 ROBO3Q96MS0 1386 aa18.24■□□□□ 0.51
LSM1-203ENST00000520755 MAP3K9P80192 1104 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 MAP3K10Q02779 954 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 DEFB115Q30KQ5 88 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 LDLRAD1Q5T700 205 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 C12orf60Q5U649 245 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 ANKRD13AQ8IZ07 590 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 ZKSCAN4Q969J2 545 aaPredicted RBP18.23■□□□□ 0.51
LSM1-203ENST00000520755 CLMNQ96JQ2 1002 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 EHD4Q9H223 541 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 DNAJC18Q9H819 358 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 TACC3Q9Y6A5 838 aa18.23■□□□□ 0.51
LSM1-203ENST00000520755 RASSF10A6NK89 507 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 CYP21A2P08686 494 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 INPP5BP32019 993 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 HSPA4P34932 840 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 ZNF157P51786 506 aaPredicted RBP18.22■□□□□ 0.51
LSM1-203ENST00000520755 GRM1Q13255 1194 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 VGLL4Q14135 290 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 SBK1Q52WX2 424 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.22■□□□□ 0.51
LSM1-203ENST00000520755 STK11IPQ8N1F8 1099 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 DYNLL2Q96FJ2 89 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 CSADQ9Y600 493 aa18.22■□□□□ 0.51
LSM1-203ENST00000520755 PHF20L1A8MW92 1017 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 SLC27A2O14975 620 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 HAND2P61296 217 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 CREB3L3Q68CJ9 461 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 RGMBQ6NW40 437 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 METTL16Q86W50 562 aaKnown RBP18.21■□□□□ 0.51
LSM1-203ENST00000520755 TBC1D10CQ8IV04 446 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 KCNB2Q92953 911 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 HHIPL1Q96JK4 782 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 ELP3Q9H9T3 547 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 ZNF112Q9UJU3 913 aa18.21■□□□□ 0.51
LSM1-203ENST00000520755 PPARAQ07869 468 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 CYP4F22Q6NT55 531 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 STOX1Q6ZVD7 989 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 RASEFQ8IZ41 740 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 SLC44A5Q8NCS7 719 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 SLC10A4Q96EP9 437 aa18.2■□□□□ 0.5
LSM1-203ENST00000520755 EIF5BO60841 1220 aaKnown RBP18.19■□□□□ 0.5
LSM1-203ENST00000520755 CTDSPL2Q05D32 466 aa18.19■□□□□ 0.5
LSM1-203ENST00000520755 GABPAQ06546 454 aa18.19■□□□□ 0.5
LSM1-203ENST00000520755 RRP1BQ14684 758 aaKnown RBP18.19■□□□□ 0.5
LSM1-203ENST00000520755 TBC1D32Q96NH3 1257 aa18.19■□□□□ 0.5
LSM1-203ENST00000520755 CTNNA3Q9UI47 895 aa18.19■□□□□ 0.5
LSM1-203ENST00000520755 ANAPC4Q9UJX5 808 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms