RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 MYH1P12882 1939 aa36.12■■■■□ 3.37
SYNPO-203ENST00000518872 LRRCC1Q9C099 1032 aa36.11■■■■□ 3.37
SYNPO-203ENST00000518872 TRIM17Q9Y577 477 aa36.11■■■■□ 3.37
SYNPO-203ENST00000518872 A0A0G2JLL6 359 aaPredicted RBP36.1■■■■□ 3.37
SYNPO-203ENST00000518872 DYNLL1P63167 89 aaKnown RBP36.1■■■■□ 3.37
SYNPO-203ENST00000518872 PRRT2Q7Z6L0 340 aaPredicted RBP36.1■■■■□ 3.37
SYNPO-203ENST00000518872 MAPKAPK5Q8IW41 473 aa36.1■■■■□ 3.37
SYNPO-203ENST00000518872 CD99L2Q8TCZ2 262 aa36.1■■■■□ 3.37
SYNPO-203ENST00000518872 FAM196BA6NMK8 535 aa36.08■■■■□ 3.37
SYNPO-203ENST00000518872 ATP5JP18859 108 aa36.08■■■■□ 3.37
SYNPO-203ENST00000518872 FASTKD5Q7L8L6 764 aaKnown RBP36.08■■■■□ 3.37
SYNPO-203ENST00000518872 FOXP4Q8IVH2 680 aaPredicted RBP36.08■■■■□ 3.37
SYNPO-203ENST00000518872 TBC1D2Q9BYX2 928 aa36.08■■■■□ 3.37
SYNPO-203ENST00000518872 PDHXO00330 501 aa36.07■■■■□ 3.36
SYNPO-203ENST00000518872 CAP2P40123 477 aa36.07■■■■□ 3.36
SYNPO-203ENST00000518872 RRP1P56182 461 aaKnown RBP36.07■■■■□ 3.36
SYNPO-203ENST00000518872 DCTPP1Q9H773 170 aa36.07■■■■□ 3.36
SYNPO-203ENST00000518872 ADGRA2Q96PE1 1338 aa36.07■■■■□ 3.36
SYNPO-203ENST00000518872 ARHGEF6Q15052 776 aa36.06■■■■□ 3.36
SYNPO-203ENST00000518872 GPAT2Q6NUI2 795 aa36.06■■■■□ 3.36
SYNPO-203ENST00000518872 MIGA1Q8NAN2 632 aa36.06■■■■□ 3.36
SYNPO-203ENST00000518872 EFCC1Q9HA90 598 aa36.06■■■■□ 3.36
SYNPO-203ENST00000518872 RIOK1Q9BRS2 568 aaKnown RBP36.05■■■■□ 3.36
SYNPO-203ENST00000518872 SLC45A1Q9Y2W3 748 aa36.05■■■■□ 3.36
SYNPO-203ENST00000518872 HTTP42858 3142 aa36.05■■■■□ 3.36
SYNPO-203ENST00000518872 GOLIM4O00461 696 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 PDE6AP16499 860 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 CAP1Q01518 475 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 C17orf99Q6UX52 265 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 DNAJC2Q99543 621 aaKnown RBP36.04■■■■□ 3.36
SYNPO-203ENST00000518872 PALD1Q9ULE6 856 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 PTPN22Q9Y2R2 807 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 MYH7P12883 1935 aa36.04■■■■□ 3.36
SYNPO-203ENST00000518872 DDX60LQ5H9U9 1706 aaKnown RBP36.03■■■■□ 3.36
SYNPO-203ENST00000518872 RRP1BQ14684 758 aaKnown RBP36.03■■■■□ 3.36
SYNPO-203ENST00000518872 SLC9C2Q5TAH2 1124 aa36.03■■■■□ 3.36
SYNPO-203ENST00000518872 DNAJC18Q9H819 358 aa36.03■■■■□ 3.36
SYNPO-203ENST00000518872 HLA-DOAP06340 250 aa36.02■■■■□ 3.36
SYNPO-203ENST00000518872 PARK7Q99497 189 aaKnown RBP36.02■■■■□ 3.36
SYNPO-203ENST00000518872 HAUS7Q99871 368 aa36.02■■■■□ 3.36
SYNPO-203ENST00000518872 GINM1Q9NU53 330 aa36.02■■■■□ 3.36
SYNPO-203ENST00000518872 PAG1Q9NWQ8 432 aa36.02■■■■□ 3.36
SYNPO-203ENST00000518872 LOC285556D6RIA3 1793 aa36.02■■■■□ 3.36
SYNPO-203ENST00000518872 TCRBV5S4A2TA0A5A2 114 aa36■■■■□ 3.35
SYNPO-203ENST00000518872 USP5P45974 858 aa36■■■■□ 3.35
SYNPO-203ENST00000518872 LACTBP83111 547 aaPredicted RBP36■■■■□ 3.35
SYNPO-203ENST00000518872 BOLA2Q9H3K6 86 aa36■■■■□ 3.35
SYNPO-203ENST00000518872 FRMD4AQ9P2Q2 1039 aaPredicted RBP36■■■■□ 3.35
SYNPO-203ENST00000518872 TRIM75PA6NK02 468 aa35.99■■■■□ 3.35
SYNPO-203ENST00000518872 CRACR2BQ8N4Y2 399 aaPredicted RBP35.99■■■■□ 3.35
SYNPO-203ENST00000518872 EHD4Q9H223 541 aa35.99■■■■□ 3.35
SYNPO-203ENST00000518872 NAV1Q8NEY1 1877 aa35.99■■■■□ 3.35
SYNPO-203ENST00000518872 MAGEB6P1A0A0J9YX57 407 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 USP17L5A8MUK1 530 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 GNRH1P01148 92 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 ASNSP08243 561 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 ZNF280CQ8ND82 737 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 ZNF532Q9HCE3 1301 aa35.98■■■■□ 3.35
SYNPO-203ENST00000518872 SMARCA5O60264 1052 aaPredicted RBP35.97■■■■□ 3.35
SYNPO-203ENST00000518872 KIF22Q14807 665 aa35.97■■■■□ 3.35
SYNPO-203ENST00000518872 CCDC84Q86UT8 332 aaPredicted RBP35.97■■■■□ 3.35
SYNPO-203ENST00000518872 PROCA1Q8NCQ7 364 aaPredicted RBP35.97■■■■□ 3.35
SYNPO-203ENST00000518872 EDC3Q96F86 508 aaKnown RBP35.97■■■■□ 3.35
SYNPO-203ENST00000518872 SAP30BPQ9UHR5 308 aaKnown RBP35.97■■■■□ 3.35
SYNPO-203ENST00000518872 PCDHB15Q9Y5E8 787 aa35.97■■■■□ 3.35
SYNPO-203ENST00000518872 ZSWIM8A7E2V4 1837 aa35.97■■■■□ 3.35
SYNPO-203ENST00000518872 GADL1Q6ZQY3 521 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 WDR18Q9BV38 432 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 TRIM34Q9BYJ4 488 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 BCL11AQ9H165 835 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 AS3MTQ9HBK9 375 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 AGTPBP1Q9UPW5 1226 aa35.96■■■■□ 3.35
SYNPO-203ENST00000518872 MLLT1Q03111 559 aaPredicted RBP35.95■■■■□ 3.35
SYNPO-203ENST00000518872 SPP2Q13103 211 aa35.95■■■■□ 3.35
SYNPO-203ENST00000518872 TTC6Q86TZ1 520 aa35.95■■■■□ 3.35
SYNPO-203ENST00000518872 ECHDC1Q9NTX5 307 aa35.95■■■■□ 3.35
SYNPO-203ENST00000518872 CPA4Q9UI42 421 aa35.95■■■■□ 3.35
SYNPO-203ENST00000518872 BCRP11274 1271 aa35.94■■■■□ 3.34
SYNPO-203ENST00000518872 ADD2P35612 726 aa35.94■■■■□ 3.34
SYNPO-203ENST00000518872 SH3D19Q5HYK7 790 aa35.94■■■■□ 3.34
SYNPO-203ENST00000518872 CRNKL1Q9BZJ0 848 aaKnown RBP35.94■■■■□ 3.34
SYNPO-203ENST00000518872 DDX24Q9GZR7 859 aaKnown RBP eCLIP35.94■■■■□ 3.34
SYNPO-203ENST00000518872 SOX10P56693 466 aa35.93■■■■□ 3.34
SYNPO-203ENST00000518872 TATDN1Q6P1N9 297 aa35.93■■■■□ 3.34
SYNPO-203ENST00000518872 YTHDC1Q96MU7 727 aaKnown RBP35.93■■■■□ 3.34
SYNPO-203ENST00000518872 SERPINB13Q9UIV8 391 aa35.93■■■■□ 3.34
SYNPO-203ENST00000518872 MGAMO43451 1857 aa35.92■■■■□ 3.34
SYNPO-203ENST00000518872 CYP2C8P10632 490 aa35.92■■■■□ 3.34
SYNPO-203ENST00000518872 ARMC5Q96C12 935 aa35.92■■■■□ 3.34
SYNPO-203ENST00000518872 KIAA0100Q14667 2235 aaKnown RBP35.91■■■■□ 3.34
SYNPO-203ENST00000518872 PRMT2P55345 433 aa35.91■■■■□ 3.34
SYNPO-203ENST00000518872 ARHGAP39Q9C0H5 1083 aa35.91■■■■□ 3.34
SYNPO-203ENST00000518872 RBBP6Q7Z6E9 1792 aaKnown RBP35.91■■■■□ 3.34
SYNPO-203ENST00000518872 JAG1P78504 1218 aa35.9■■■■□ 3.34
SYNPO-203ENST00000518872 UBE3CQ15386 1083 aa35.9■■■■□ 3.34
SYNPO-203ENST00000518872 ZBTB21Q9ULJ3 1066 aa35.9■■■■□ 3.34
SYNPO-203ENST00000518872 GPATCH3Q96I76 525 aa35.89■■■■□ 3.34
SYNPO-203ENST00000518872 PNMA3Q9UL41 463 aa35.89■■■■□ 3.34
SYNPO-203ENST00000518872 LCORLQ8N3X6 602 aa35.88■■■■□ 3.33
SYNPO-203ENST00000518872 TAOK2Q9UL54 1235 aa35.88■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms