RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TROQ12816 1431 aaPredicted RBP7.98□□□□□ -1.13
NUP54-218ENST00000515460 GALNT12Q8IXK2 581 aa7.98□□□□□ -1.13
NUP54-218ENST00000515460 CITED4Q96RK1 184 aa7.98□□□□□ -1.13
NUP54-218ENST00000515460 CLEC4MQ9H2X3 399 aaPredicted RBP7.98□□□□□ -1.13
NUP54-218ENST00000515460 PPP1R1BQ9UD71 204 aaPredicted RBP7.98□□□□□ -1.13
NUP54-218ENST00000515460 ABCA6Q8N139 1617 aa7.98□□□□□ -1.13
NUP54-218ENST00000515460 HSPA6P17066 643 aa7.97□□□□□ -1.13
NUP54-218ENST00000515460 TBC1D32Q96NH3 1257 aa7.97□□□□□ -1.13
NUP54-218ENST00000515460 TCF12Q99081 682 aa7.97□□□□□ -1.13
NUP54-218ENST00000515460 GOLGA2P5Q9HBQ8 144 aa7.97□□□□□ -1.13
NUP54-218ENST00000515460 ITSN2Q9NZM3 1697 aa7.96□□□□□ -1.13
NUP54-218ENST00000515460 CYP11A1P05108 521 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 CTSBP07858 339 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 RAB6AP20340 208 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 ADMP35318 185 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 ARHGAP4P98171 946 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 POU4F3Q15319 338 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 AKAP4Q5JQC9 854 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 NRSN2Q9GZP1 204 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 RAD18Q9NS91 495 aa7.96□□□□□ -1.14
NUP54-218ENST00000515460 ZNF518AQ6AHZ1 1483 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 BRD1O95696 1058 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 NFICP08651 508 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 ADH5P11766 374 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 FOSL1P15407 271 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 DYMQ7RTS9 669 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 TMC1Q8TDI8 760 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 YIPF2Q9BWQ6 316 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 EHD4Q9H223 541 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 ANGEL1Q9UNK9 670 aaKnown RBP7.95□□□□□ -1.14
NUP54-218ENST00000515460 ACTL7BQ9Y614 415 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 REREQ9P2R6 1566 aa7.95□□□□□ -1.14
NUP54-218ENST00000515460 MLH3Q9UHC1 1453 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 CHD4Q14839 1912 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 DEPDC5O75140 1603 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 KIF14Q15058 1648 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 EIF4EBP3O60516 100 aaPredicted RBP7.94□□□□□ -1.14
NUP54-218ENST00000515460 ECEL1O95672 775 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 TXKP42681 527 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 HNRNPMP52272 730 aaKnown RBP eCLIP7.94□□□□□ -1.141e-7■■■■□ 25.9
NUP54-218ENST00000515460 ORC1Q13415 861 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 ECM1Q16610 540 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 CORO1BQ9BR76 489 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 ANP32EQ9BTT0 268 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 PRKAG2Q9UGJ0 569 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 PCNTO95613 3336 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 CLIP1P30622 1438 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 LRRC9Q6ZRR7 1453 aa7.94□□□□□ -1.14
NUP54-218ENST00000515460 ARHGAP5Q13017 1502 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 MAP3K1Q13233 1512 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 FAM170BA6NMN3 283 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 CYP26A1O43174 497 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 ZAR1Q86SH2 424 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 KRTAP19-1Q8IUB9 90 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 THEMISQ8N1K5 641 aaPredicted RBP7.93□□□□□ -1.14
NUP54-218ENST00000515460 UBE2Q2Q8WVN8 375 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 FAM129BQ96TA1 746 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 LGR6Q9HBX8 967 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 AP4E1Q9UPM8 1137 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 RNF114Q9Y508 228 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 KDM5DQ9BY66 1539 aa7.93□□□□□ -1.14
NUP54-218ENST00000515460 CPNE3O75131 537 aaKnown RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 MSMPQ1L6U9 139 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 KIAA0319Q5VV43 1072 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 ABI1Q8IZP0 508 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 DDX54Q8TDD1 881 aaKnown RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 EZH1Q92800 747 aaPredicted RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 DMRTB1Q96MA1 342 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 TRIM56Q9BRZ2 755 aaKnown RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 METTL22Q9BUU2 404 aaPredicted RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 NPHS2Q9NP85 383 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 TRPC5Q9UL62 973 aaPredicted RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 WWC3Q9ULE0 1092 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 GNEQ9Y223 722 aaKnown RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 NINLQ9Y2I6 1382 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 CASKIN1Q8WXD9 1431 aa7.92□□□□□ -1.14
NUP54-218ENST00000515460 ZC3H13Q5T200 1668 aaKnown RBP7.92□□□□□ -1.14
NUP54-218ENST00000515460 SOWAHDA6NJG2 315 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 ASPAP45381 313 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 DUSP27Q5VZP5 1158 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 FMNL2Q96PY5 1086 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 ZNF576Q9H609 170 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 LRRC4CQ9HCJ2 640 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 FAM105AQ9NUU6 356 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 CCDC39Q9UFE4 941 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 ADGRE2Q9UHX3 823 aa7.91□□□□□ -1.14
NUP54-218ENST00000515460 DIP2AQ14689 1571 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 B3GALT4O96024 378 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 ZNF157P51786 506 aaPredicted RBP7.9□□□□□ -1.14
NUP54-218ENST00000515460 MAP7Q14244 749 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 PDE3AQ14432 1141 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 CPSF6Q16630 551 aaKnown RBP eCLIP7.9□□□□□ -1.14
NUP54-218ENST00000515460 HP1BP3Q5SSJ5 553 aaPredicted RBP7.9□□□□□ -1.14
NUP54-218ENST00000515460 TP53INP2Q8IXH6 220 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 DNAJC25Q9H1X3 360 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 SEMA6CQ9H3T2 930 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 ZFYVE1Q9HBF4 777 aa7.9□□□□□ -1.14
NUP54-218ENST00000515460 BIN2Q9UBW5 565 aaPredicted RBP7.9□□□□□ -1.14
NUP54-218ENST00000515460 TNS2Q63HR2 1409 aa7.89□□□□□ -1.15
NUP54-218ENST00000515460 TNRQ92752 1358 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms