RNA–Protein interactions for RNA: ENST00000514536.5

USP46-209, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 1,589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-209ENST00000514536 CNKSR2Q8WXI2 1034 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 OPTNQ96CV9 577 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 STRBPQ96SI9 672 aaKnown RBP16.79■□□□□ 0.28
USP46-209ENST00000514536 MCM9Q9NXL9 1143 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 SNCAIPQ9Y6H5 919 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 SLC4A4Q9Y6R1 1079 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 AK9Q5TCS8 1911 aa16.79■□□□□ 0.28
USP46-209ENST00000514536 COL2A1P02458 1487 aaPredicted RBP16.79■□□□□ 0.28
USP46-209ENST00000514536 M0R2C6 588 aa16.78■□□□□ 0.28
USP46-209ENST00000514536 POLR3DP05423 398 aaPredicted RBP16.78■□□□□ 0.28
USP46-209ENST00000514536 HLA-DOAP06340 250 aa16.78■□□□□ 0.28
USP46-209ENST00000514536 TTC6Q86TZ1 520 aa16.78■□□□□ 0.28
USP46-209ENST00000514536 CRACR2BQ8N4Y2 399 aaPredicted RBP16.78■□□□□ 0.28
USP46-209ENST00000514536 SEC62Q99442 399 aaKnown RBP16.78■□□□□ 0.28
USP46-209ENST00000514536 DCP1AQ9NPI6 582 aaPredicted RBP16.78■□□□□ 0.28
USP46-209ENST00000514536 ZMYM1Q5SVZ6 1142 aa16.77■□□□□ 0.28
USP46-209ENST00000514536 ATP8A2Q9NTI2 1148 aa16.77■□□□□ 0.28
USP46-209ENST00000514536 HERC5Q9UII4 1024 aaKnown RBP16.77■□□□□ 0.28
USP46-209ENST00000514536 GPAA1O43292 621 aa16.77■□□□□ 0.27
USP46-209ENST00000514536 ZBTB48P10074 688 aaPredicted RBP16.77■□□□□ 0.27
USP46-209ENST00000514536 LBX1P52954 281 aa16.77■□□□□ 0.27
USP46-209ENST00000514536 NOL9Q5SY16 702 aaKnown RBP16.77■□□□□ 0.27
USP46-209ENST00000514536 ERO1BQ86YB8 467 aa16.77■□□□□ 0.27
USP46-209ENST00000514536 OTUD5Q96G74 571 aa16.77■□□□□ 0.27
USP46-209ENST00000514536 TRIM34Q9BYJ4 488 aa16.77■□□□□ 0.27
USP46-209ENST00000514536 SPDYE5A6NIY4 337 aa16.76■□□□□ 0.27
USP46-209ENST00000514536 CTNND1O60716 968 aaKnown RBP16.76■□□□□ 0.27
USP46-209ENST00000514536 HSPA8P11142 646 aaKnown RBP16.76■□□□□ 0.27
USP46-209ENST00000514536 PLCD1P51178 756 aa16.76■□□□□ 0.27
USP46-209ENST00000514536 METTL16Q86W50 562 aaKnown RBP16.76■□□□□ 0.27
USP46-209ENST00000514536 SCYL3Q8IZE3 742 aa16.76■□□□□ 0.27
USP46-209ENST00000514536 BEGAINQ9BUH8 593 aa16.76■□□□□ 0.27
USP46-209ENST00000514536 DNAJC18Q9H819 358 aa16.76■□□□□ 0.27
USP46-209ENST00000514536 GSG1L2A8MUP6 293 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 CYP2D6P10635 497 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 EVX2Q03828 476 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 RRP1BQ14684 758 aaKnown RBP16.75■□□□□ 0.27
USP46-209ENST00000514536 TTC22Q5TAA0 569 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 REM2Q8IYK8 340 aaPredicted RBP16.75■□□□□ 0.27
USP46-209ENST00000514536 DDRGK1Q96HY6 314 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 SERPINB13Q9UIV8 391 aa16.75■□□□□ 0.27
USP46-209ENST00000514536 MANSC4A6NHS7 340 aaPredicted RBP16.74■□□□□ 0.27
USP46-209ENST00000514536 SDSP20132 328 aa16.74■□□□□ 0.27
USP46-209ENST00000514536 CCDC129Q6ZRS4 1044 aa16.74■□□□□ 0.27
USP46-209ENST00000514536 TICAM2Q86XR7 235 aa16.74■□□□□ 0.27
USP46-209ENST00000514536 FAM227BQ96M60 508 aa16.74■□□□□ 0.27
USP46-209ENST00000514536 PICK1Q9NRD5 415 aa16.74■□□□□ 0.27
USP46-209ENST00000514536 PATL2C9JE40 543 aaKnown RBP16.73■□□□□ 0.27
USP46-209ENST00000514536 USP17L12C9JPN9 530 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 USP17L21D6R901 530 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 IRF6O14896 467 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 APPP05067 770 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 GSPT1P15170 499 aaKnown RBP16.73■□□□□ 0.27
USP46-209ENST00000514536 PTPRAP18433 802 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 GNAT2P19087 354 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 CAP2P40123 477 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 TM4SF4P48230 202 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 PPATQ06203 517 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 SREBF2Q12772 1141 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 CTR9Q6PD62 1173 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 SKAP1Q86WV1 359 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 EHD4Q9H223 541 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 HELLSQ9NRZ9 838 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 THSD7BQ9C0I4 1608 aa16.73■□□□□ 0.27
USP46-209ENST00000514536 CYP2D7A0A087X1C5 515 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 NMIQ13287 307 aaPredicted RBP16.72■□□□□ 0.27
USP46-209ENST00000514536 PPIL2Q13356 520 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 MS4A4AQ96JQ5 239 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.72■□□□□ 0.27
USP46-209ENST00000514536 ZHX2Q9Y6X8 837 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 CDK5RAP2Q96SN8 1893 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 MYH7P12883 1935 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 A0A0D9SFI3 127 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 SMIM22K7EJ46 135 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 TRPA1O75762 1119 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 GTF2A2P52657 109 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 INHBEP58166 350 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 MCMDC2Q4G0Z9 681 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 C12orf60Q5U649 245 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 ERICH6BQ5W0A0 696 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 GIMAP6Q6P9H5 292 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 CCDC84Q86UT8 332 aaPredicted RBP16.72■□□□□ 0.27
USP46-209ENST00000514536 AMOTL1Q8IY63 956 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 DYNLL2Q96FJ2 89 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 RNF186Q9NXI6 227 aa16.72■□□□□ 0.27
USP46-209ENST00000514536 GDF11O95390 407 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 JAG1P78504 1218 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 GABPAQ06546 454 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 TATDN1Q6P1N9 297 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 IFNL3Q8IZI9 196 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 PPP4R2Q9NY27 417 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 TSKSQ9UJT2 592 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 OTOFQ9HC10 1997 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 FOCADQ5VW36 1801 aa16.71■□□□□ 0.27
USP46-209ENST00000514536 CCL15-CCL14A0A0B4J2E2 113 aa16.7■□□□□ 0.26
USP46-209ENST00000514536 SHMT1P34896 483 aa16.7■□□□□ 0.26
USP46-209ENST00000514536 TDO2P48775 406 aa16.7■□□□□ 0.26
USP46-209ENST00000514536 SNAPC2Q13487 334 aa16.7■□□□□ 0.26
USP46-209ENST00000514536 CCL15Q16663 113 aa16.7■□□□□ 0.26
USP46-209ENST00000514536 SHROOM1Q2M3G4 852 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms