RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 C1GALT1Q9NS00 363 aa6.3□□□□□ -1.4
NUP54-212ENST00000513248 TTF2Q9UNY4 1162 aaKnown RBP6.3□□□□□ -1.4
NUP54-212ENST00000513248 ZNF862O60290 1169 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 CELA3AP09093 270 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 ITGAEP38570 1179 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 ASPAP45381 313 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 CYP27C1Q4G0S4 372 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 ERMP1Q7Z2K6 904 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 WFDC3Q8IUB2 231 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 WDR89Q96FK6 387 aaPredicted RBP6.29□□□□□ -1.4
NUP54-212ENST00000513248 CBX8Q9HC52 389 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 VTI1BQ9UEU0 232 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 PPP1R9AQ9ULJ8 1098 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 SAMM50Q9Y512 469 aa6.29□□□□□ -1.4
NUP54-212ENST00000513248 TMPRSS2O15393 492 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 SLFN14P0C7P3 912 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 PLCL1Q15111 1095 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 KIF4BQ2VIQ3 1234 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 ZNF792Q3KQV3 632 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 SCARA3Q6AZY7 606 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 MRS2Q9HD23 443 aa6.28□□□□□ -1.4
NUP54-212ENST00000513248 FANCCQ00597 558 aa6.27□□□□□ -1.41
NUP54-212ENST00000513248 ID3Q02535 119 aa6.27□□□□□ -1.41
NUP54-212ENST00000513248 MAP1SQ66K74 1059 aaPredicted RBP6.27□□□□□ -1.41
NUP54-212ENST00000513248 ATG4DQ86TL0 474 aaPredicted RBP6.27□□□□□ -1.41
NUP54-212ENST00000513248 METTL16Q86W50 562 aaKnown RBP6.27□□□□□ -1.41
NUP54-212ENST00000513248 RSRP1Q9BUV0 290 aa6.27□□□□□ -1.41
NUP54-212ENST00000513248 METTL5Q9NRN9 209 aaKnown RBP6.27□□□□□ -1.41
NUP54-212ENST00000513248 CRIM1Q9NZV1 1036 aa6.27□□□□□ -1.41
NUP54-212ENST00000513248 PCDHGC5Q9Y5F6 944 aa6.27□□□□□ -1.41
NUP54-212ENST00000513248 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.27□□□□□ -1.41
NUP54-212ENST00000513248 DYNC1LI2O43237 492 aaPredicted RBP6.26□□□□□ -1.41
NUP54-212ENST00000513248 RPS26P62854 115 aaKnown RBP6.26□□□□□ -1.41
NUP54-212ENST00000513248 PCNX4Q63HM2 1172 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 LLGL2Q6P1M3 1020 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 AGMOQ6ZNB7 445 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 SPRED2Q7Z698 418 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 GRIN3AQ8TCU5 1115 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 GPBAR1Q8TDU6 330 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 ACSBG1Q96GR2 724 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 ATXN3LQ9H3M9 355 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 KCNQ5Q9NR82 932 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 DAGLAQ9Y4D2 1042 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 ATAD2BQ9ULI0 1458 aa6.26□□□□□ -1.41
NUP54-212ENST00000513248 BAZ1AQ9NRL2 1556 aaPredicted RBP6.26□□□□□ -1.41
NUP54-212ENST00000513248 CARMIL2Q6F5E8 1435 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 SMARCA4P51532 1647 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 TRIM37O94972 964 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 FUT4P22083 530 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 LRRC14Q15048 493 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 CCDC85BQ15834 202 aaPredicted RBP6.25□□□□□ -1.41
NUP54-212ENST00000513248 ZNF574Q6ZN55 896 aaPredicted RBP6.25□□□□□ -1.41
NUP54-212ENST00000513248 NETO1Q8TDF5 533 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 FANCD2OSQ96PS1 177 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 PIDD1Q9HB75 910 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 CYP8B1Q9UNU6 501 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 NCAPD3P42695 1498 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 SMARCA2P51531 1590 aa6.25□□□□□ -1.41
NUP54-212ENST00000513248 BAZ1BQ9UIG0 1483 aaKnown RBP6.24□□□□□ -1.41
NUP54-212ENST00000513248 DBX1A6NMT0 343 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 FARP2O94887 1054 aaPredicted RBP6.24□□□□□ -1.41
NUP54-212ENST00000513248 GARTP22102 1010 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 LIG3P49916 1009 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 ZNF648Q5T619 568 aaPredicted RBP6.24□□□□□ -1.41
NUP54-212ENST00000513248 MPRIPQ6WCQ1 1025 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 PHC3Q8NDX5 983 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 GAL3ST3Q96A11 431 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 RHOVQ96L33 236 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 MKNK2Q9HBH9 465 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 DISC1Q9NRI5 854 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 VAV3Q9UKW4 847 aa6.24□□□□□ -1.41
NUP54-212ENST00000513248 ERCC6Q03468 1493 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 SCAMP3O14828 347 aaKnown RBP6.23□□□□□ -1.41
NUP54-212ENST00000513248 RLBP1P12271 317 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 TFE3P19532 575 aaPredicted RBP6.23□□□□□ -1.41
NUP54-212ENST00000513248 ZC3H12AQ5D1E8 599 aaKnown RBP6.23□□□□□ -1.41
NUP54-212ENST00000513248 TTBK2Q6IQ55 1244 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 TMEM87AQ8NBN3 555 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 TMEM40Q8WWA1 233 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 COPRSQ9NQ92 184 aa6.23□□□□□ -1.41
NUP54-212ENST00000513248 HCLS1P14317 486 aaPredicted RBP6.22□□□□□ -1.41
NUP54-212ENST00000513248 ERVK-24P63145 666 aa6.22□□□□□ -1.41
NUP54-212ENST00000513248 PRKCQQ04759 706 aa6.22□□□□□ -1.41
NUP54-212ENST00000513248 PTPN11Q06124 597 aaPredicted RBP6.22□□□□□ -1.41
NUP54-212ENST00000513248 RING1Q06587 406 aa6.22□□□□□ -1.41
NUP54-212ENST00000513248 TTLL4Q14679 1199 aa6.22□□□□□ -1.41
NUP54-212ENST00000513248 TSNAXIP1Q2TAA8 658 aa6.22□□□□□ -1.41
NUP54-212ENST00000513248 RNGTTO60942 597 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 NEFMP07197 916 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 FAM87AP0C7U9 286 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 ZNF76P36508 570 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 RBM25P49756 843 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 HDLBPQ00341 1268 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 PKN1Q16512 942 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 CCDC84Q86UT8 332 aaPredicted RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 SMYD4Q8IYR2 804 aaPredicted RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 PLD6Q8N2A8 252 aaKnown RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 BHLHE22Q8NFJ8 381 aaPredicted RBP6.21□□□□□ -1.42
NUP54-212ENST00000513248 FAM168AQ92567 244 aa6.21□□□□□ -1.42
NUP54-212ENST00000513248 TMEM74Q96NL1 305 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms