RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PPP1R7Q15435 360 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 BACH1O14867 736 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 KRT14P02533 472 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 CLTAP09496 248 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 MARCKSP29966 332 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 AMPHP49418 695 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 MYCBPAPQ8TBZ2 947 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 NOC3LQ8WTT2 800 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 TCP11Q8WWU5 503 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 TSC22D3Q99576 134 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 PCDHGC5Q9Y5F6 944 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 ATP5JP18859 108 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 ABCD1P33897 745 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 MYLK4Q86YV6 388 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 CCDC47Q96A33 483 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 ACTR5Q9H9F9 607 aaPredicted RBP13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 A0A1B0GVG6 124 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 SMNDC1O75940 238 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 MAGEC3Q8TD91 643 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 OSBPL7Q9BZF2 842 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 NFE2L3Q9Y4A8 694 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 SBNO2Q9Y2G9 1366 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 SETSIPP0DME0 302 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 RBL2Q08999 1139 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 SPATA21Q7Z572 469 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 PRDM16Q9HAZ2 1276 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 HSF2BPO75031 334 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 LGR5O75473 907 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 CDKL5O76039 1030 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 ATP6V1G2O95670 118 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 PFKFB1P16118 471 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 MATR3P43243 847 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 SKOR1P84550 965 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 ARMCX6Q7L4S7 300 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 PPP1R42Q7Z4L9 355 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 TRIM10Q9UDY6 481 aa13.54□□□□□ -0.24
LIMCH1-213ENST00000511496 DUOX2Q9NRD8 1548 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 SPDYE3A6NKU9 549 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 SPTLC2O15270 562 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 DIAPH2O60879 1101 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 PPP1R37O75864 691 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 PDE4BQ07343 736 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 NMIQ13287 307 aaPredicted RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 CWF19L1Q69YN2 538 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 MAP4K1Q92918 833 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 CUL5Q93034 780 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 SLF1Q9BQI6 1058 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 NCOA5Q9HCD5 579 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 PTPDC1A2A3K4 754 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 TEX33O43247 280 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 GLRX3O76003 335 aaKnown RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 HPDP32754 393 aaPredicted RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 SCNN1BP51168 640 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 PTGISQ16647 500 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 ANKRD23Q86SG2 305 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 OSBPL9Q96SU4 736 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 KDM4CQ9H3R0 1056 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 RGL1Q9NZL6 768 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 FAM184BQ9ULE4 1060 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 C15orf41Q9Y2V0 281 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 COL3A1P02461 1466 aaPredicted RBP13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 NRXN1Q9ULB1 1477 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 LRRC7Q96NW7 1537 aa13.53□□□□□ -0.24
LIMCH1-213ENST00000511496 A0A1W2PP64 1363 aa13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 UBTFL1P0CB47 393 aaPredicted RBP13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 IFFO1Q0D2I5 559 aa13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 NUTM2DQ5VT03 806 aaPredicted RBP13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 DNAJC14Q6Y2X3 702 aaPredicted RBP13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 CDK12Q9NYV4 1490 aaPredicted RBP13.52□□□□□ -0.24
LIMCH1-213ENST00000511496 ERICH2A1L162 156 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 NUTM2FA1L443 756 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 A6NNZ2 444 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 AHCYL1O43865 530 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 TPP2P29144 1249 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 SYKP43405 635 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 SCTRP47872 440 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 C2orf54Q08AI8 447 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 TUBB8Q3ZCM7 444 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 LINC00301Q8NCQ3 95 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 TBC1D5Q92609 795 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 CCDC97Q96F63 343 aaPredicted RBP13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 NEDD4P46934 1319 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 A0A1W2PQ27 194 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 A0A1W2PQ64 194 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 A0A1W2PQD8 194 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 FESP07332 822 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 SLC7A5Q01650 507 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 TSEN2Q8NCE0 465 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 C19orf44Q9H6X5 657 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 SAMSN1Q9NSI8 373 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 RIMS2Q9UQ26 1411 aa13.52□□□□□ -0.25
LIMCH1-213ENST00000511496 LINGO3P0C6S8 592 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ANKRD20A8PQ5CZ79 823 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 NAA16Q6N069 864 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 MAEAQ7L5Y9 396 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 ILDR1Q86SU0 546 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 MYO1AQ9UBC5 1043 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 TTF2Q9UNY4 1162 aaKnown RBP13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 SAR1BQ9Y6B6 198 aa13.51□□□□□ -0.25
LIMCH1-213ENST00000511496 CDC27P30260 824 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms