RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 CTNNA3Q9UI47 895 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 ABT1Q9ULW3 272 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 ANGEL1Q9UNK9 670 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 POLR2AP24928 1970 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 TMEM88BA6NKF7 163 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 ZNF213O14771 459 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 EIF5BO60841 1220 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 FGAP02671 866 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 CYP2D6P10635 497 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 PLCD1P51178 756 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 IMMTQ16891 758 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 CDAN1Q8IWY9 1227 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 ZNF341Q9BYN7 854 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 IL25Q9H293 177 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 MKNK2Q9HBH9 465 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 ZNF287Q9HBT7 754 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 EPB41L4AQ9HCS5 686 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 MKRN1Q9UHC7 482 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 HERC5Q9UII4 1024 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 SERPINB13Q9UIV8 391 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 FZD1Q9UP38 647 aa9.78□□□□□ -0.84
LIMCH1-206ENST00000505705 CYP2D7A0A087X1C5 515 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 FAM196BA6NMK8 535 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 REC8O95072 547 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 APLP1P51693 650 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 HAND2P61296 217 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 PTH1RQ03431 593 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 PDE4BQ07343 736 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 PPARAQ07869 468 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 SBK1Q52WX2 424 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 C12orf60Q5U649 245 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 CST9Q5W186 159 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 PAXIP1Q6ZW49 1069 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 WRNIP1Q96S55 665 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 TOMM22Q9NS69 142 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 CSADQ9Y600 493 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 PASKQ96RG2 1323 aa9.77□□□□□ -0.85
LIMCH1-206ENST00000505705 ATRNL1Q5VV63 1379 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 UBE2Q2LH0YL09 131 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 MPHOSPH10O00566 681 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 TBC1D12O60347 775 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 USP2O75604 605 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 SLURP2P0DP57 97 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 HUNKP57058 714 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 C1QTNF8P60827 252 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 FKBP1BP68106 108 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 MAP3K9P80192 1104 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 CTDSPL2Q05D32 466 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 ALX1Q15699 326 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 CERKLQ49MI3 558 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 MOB2Q70IA6 237 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 ZNF444Q8N0Y2 327 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 DYNLL2Q96FJ2 89 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 EHD4Q9H223 541 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 CABP5Q9NP86 173 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 SWAP70Q9UH65 585 aa9.76□□□□□ -0.85
LIMCH1-206ENST00000505705 COL2A1P02458 1487 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 GDF11O95390 407 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 CDK8P49336 464 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 GRM1Q13255 1194 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 RRP12Q5JTH9 1297 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 RNF20Q5VTR2 975 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 ANKRD13AQ8IZ07 590 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 MAP4K1Q92918 833 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 ZKSCAN4Q969J2 545 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 KLRG1Q96E93 195 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 SLC10A4Q96EP9 437 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 LSG1Q9H089 658 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 PICK1Q9NRD5 415 aa9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 RBM8AQ9Y5S9 174 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-206ENST00000505705 NAV1Q8NEY1 1877 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 MYH1P12882 1939 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 PITPNM1O00562 1244 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 FOXP2O15409 715 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 PRDM1O75626 825 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 MCCP23508 829 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 ZNF157P51786 506 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 EVX2Q03828 476 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 TRDNQ13061 729 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 MFSD6Q6ZSS7 791 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 C16orf86Q6ZW13 317 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 SLC44A5Q8NCS7 719 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 RNF41Q9H4P4 317 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 CREBZFQ9NS37 354 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 TLL2Q9Y6L7 1015 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 ZMYM6O95789 1325 aa9.74□□□□□ -0.85
LIMCH1-206ENST00000505705 FOCADQ5VW36 1801 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 CDK5RAP2Q96SN8 1893 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 TSPY2A6NKD2 308 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 SMIM22K7EJ46 135 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 RANBP6O60518 1105 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 CTNND1O60716 968 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 TSPY3P0CV98 308 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 TSPY8P0CW00 308 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 ZKSCAN1P17029 563 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 INPP5BP32019 993 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 CAP2P40123 477 aa9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 FXR2P51116 673 aaKnown RBP eCLIP9.73□□□□□ -0.85
LIMCH1-206ENST00000505705 MAP3K10Q02779 954 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms