RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MDM2Q00987 491 aaPredicted RBP20.58■□□□□ 0.89
VIM-208ENST00000497849 SPP2Q13103 211 aa20.58■□□□□ 0.89
VIM-208ENST00000497849 USP44Q9H0E7 712 aa20.58■□□□□ 0.89
VIM-208ENST00000497849 ASCC2Q9H1I8 757 aaPredicted RBP20.58■□□□□ 0.89
VIM-208ENST00000497849 FAM196BA6NMK8 535 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 TBC1D12O60347 775 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 CYP2B6P20813 491 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 PHKA1P46020 1223 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 HMGCS2P54868 508 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 PICALMQ13492 652 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 LRRC26Q2I0M4 334 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 PRUNE2Q8WUY3 3088 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 GNL3LQ9NVN8 582 aaKnown RBP20.57■□□□□ 0.88
VIM-208ENST00000497849 DENND2AQ9ULE3 1009 aa20.57■□□□□ 0.88
VIM-208ENST00000497849 ATP2B3Q16720 1220 aa20.56■□□□□ 0.88
VIM-208ENST00000497849 ZNF280CQ8ND82 737 aa20.56■□□□□ 0.88
VIM-208ENST00000497849 FAM161BQ96MY7 647 aa20.56■□□□□ 0.88
VIM-208ENST00000497849 MORF4L1Q9UBU8 362 aa20.56■□□□□ 0.88
VIM-208ENST00000497849 SEMA3EO15041 775 aa20.55■□□□□ 0.88
VIM-208ENST00000497849 BTDP43251 543 aa20.55■□□□□ 0.88
VIM-208ENST00000497849 FAM163AQ96GL9 167 aaPredicted RBP20.55■□□□□ 0.88
VIM-208ENST00000497849 ZBTB22O15209 634 aa20.54■□□□□ 0.88
VIM-208ENST00000497849 PEX10O60683 326 aa20.54■□□□□ 0.88
VIM-208ENST00000497849 PABPC4Q13310 644 aaKnown RBP eCLIP20.54■□□□□ 0.88
VIM-208ENST00000497849 RRP1BQ14684 758 aaKnown RBP20.54■□□□□ 0.88
VIM-208ENST00000497849 LHX8Q68G74 356 aa20.54■□□□□ 0.88
VIM-208ENST00000497849 OSBPL5Q9H0X9 879 aaPredicted RBP20.54■□□□□ 0.88
VIM-208ENST00000497849 CDH23Q9H251 3354 aa20.54■□□□□ 0.88
VIM-208ENST00000497849 FRMPD3Q5JV73 1810 aa20.53■□□□□ 0.88
VIM-208ENST00000497849 XRCC5P13010 732 aaKnown RBP20.53■□□□□ 0.88
VIM-208ENST00000497849 RHBDL3P58872 404 aa20.53■□□□□ 0.88
VIM-208ENST00000497849 CACNB2Q08289 660 aaPredicted RBP20.53■□□□□ 0.88
VIM-208ENST00000497849 SH3D19Q5HYK7 790 aa20.53■□□□□ 0.88
VIM-208ENST00000497849 DZIP1Q86YF9 867 aaKnown RBP20.53■□□□□ 0.88
VIM-208ENST00000497849 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.53■□□□□ 0.88
VIM-208ENST00000497849 MAST2Q6P0Q8 1798 aa20.52■□□□□ 0.88
VIM-208ENST00000497849 CCND3P30281 292 aaPredicted RBP20.52■□□□□ 0.88
VIM-208ENST00000497849 ZGPATQ8N5A5 531 aaKnown RBP20.52■□□□□ 0.88
VIM-208ENST00000497849 MRPL50Q8N5N7 158 aaKnown RBP20.52■□□□□ 0.88
VIM-208ENST00000497849 NUDT12Q9BQG2 462 aa20.52■□□□□ 0.88
VIM-208ENST00000497849 SIL1Q9H173 461 aa20.52■□□□□ 0.88
VIM-208ENST00000497849 TXNRD2Q9NNW7 524 aa20.52■□□□□ 0.88
VIM-208ENST00000497849 MROH7-TTC4A0A0A0MT08 1334 aa20.52■□□□□ 0.87
VIM-208ENST00000497849 NPM3O75607 178 aaKnown RBP20.51■□□□□ 0.87
VIM-208ENST00000497849 ADORA1P30542 326 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 CAP2P40123 477 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 CCDC102BQ68D86 513 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 ZNF384Q8TF68 577 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 USP6NLQ92738 828 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 TBC1D2Q9BYX2 928 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 CEP126Q9P2H0 1117 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 ABCF2Q9UG63 623 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 TTC28Q96AY4 2481 aa20.51■□□□□ 0.87
VIM-208ENST00000497849 GPR75-ASB3A0A0A6YYF3 556 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 CIAO1O76071 339 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 RASGRF1Q13972 1273 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 CCL14Q16627 93 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 SLF2Q8IX21 1173 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 SOCS4Q8WXH5 440 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 P2RX7Q99572 595 aaKnown RBP20.5■□□□□ 0.87
VIM-208ENST00000497849 FBXO3Q9UK99 471 aa20.5■□□□□ 0.87
VIM-208ENST00000497849 USP17L5A8MUK1 530 aa20.49■□□□□ 0.87
VIM-208ENST00000497849 ZKSCAN1P17029 563 aaPredicted RBP20.49■□□□□ 0.87
VIM-208ENST00000497849 ZNF697Q5TEC3 545 aa20.49■□□□□ 0.87
VIM-208ENST00000497849 PRDM6Q9NQX0 595 aa20.49■□□□□ 0.87
VIM-208ENST00000497849 LTBP2Q14767 1821 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 HOXA7P31268 230 aaPredicted RBP20.48■□□□□ 0.87
VIM-208ENST00000497849 Q3C1V9 767 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 TRMT44Q8IYL2 757 aaKnown RBP20.48■□□□□ 0.87
VIM-208ENST00000497849 GPRC5AQ8NFJ5 357 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 CDX2Q99626 313 aaPredicted RBP20.48■□□□□ 0.87
VIM-208ENST00000497849 RBPJLQ9UBG7 517 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 PTPRCP08575 1304 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 PDS5AQ29RF7 1337 aaKnown RBP20.48■□□□□ 0.87
VIM-208ENST00000497849 SIPA1L1O43166 1804 aa20.48■□□□□ 0.87
VIM-208ENST00000497849 MUC3AQ02505 3323 aa20.47■□□□□ 0.87
VIM-208ENST00000497849 HERVK_113P62684 666 aa20.47■□□□□ 0.87
VIM-208ENST00000497849 IRX3P78415 501 aaPredicted RBP20.47■□□□□ 0.87
VIM-208ENST00000497849 MECOMQ03112 1051 aa20.47■□□□□ 0.87
VIM-208ENST00000497849 MTMR2Q13614 643 aa20.47■□□□□ 0.87
VIM-208ENST00000497849 PORCNQ9H237 461 aa20.47■□□□□ 0.87
VIM-208ENST00000497849 BACE1P56817 501 aa20.46■□□□□ 0.87
VIM-208ENST00000497849 MORN1Q5T089 497 aa20.46■□□□□ 0.87
VIM-208ENST00000497849 SPTY2D1Q68D10 685 aaPredicted RBP20.46■□□□□ 0.87
VIM-208ENST00000497849 POTEEQ6S8J3 1075 aa20.46■□□□□ 0.87
VIM-208ENST00000497849 LBHD1Q9BQE6 289 aaPredicted RBP20.46■□□□□ 0.87
VIM-208ENST00000497849 WDR18Q9BV38 432 aa20.46■□□□□ 0.87
VIM-208ENST00000497849 SENP6Q9GZR1 1112 aaPredicted RBP20.46■□□□□ 0.87
VIM-208ENST00000497849 AS3MTQ9HBK9 375 aa20.46■□□□□ 0.87
VIM-208ENST00000497849 MAPK4P31152 587 aa20.45■□□□□ 0.86
VIM-208ENST00000497849 IL15P40933 162 aaPredicted RBP20.45■□□□□ 0.86
VIM-208ENST00000497849 RGS2P41220 211 aa20.45■□□□□ 0.86
VIM-208ENST00000497849 JAG1P78504 1218 aa20.45■□□□□ 0.86
VIM-208ENST00000497849 PDE3AQ14432 1141 aa20.45■□□□□ 0.86
VIM-208ENST00000497849 GPR142Q7Z601 462 aa20.45■□□□□ 0.86
VIM-208ENST00000497849 MAFAQ8NHW3 353 aaPredicted RBP20.45■□□□□ 0.86
VIM-208ENST00000497849 TIMM10P62072 90 aa20.44■□□□□ 0.86
VIM-208ENST00000497849 ERVK-9P63128 1117 aa20.44■□□□□ 0.86
VIM-208ENST00000497849 ERVK-24P63145 666 aa20.44■□□□□ 0.86
VIM-208ENST00000497849 ERICH6Q7L0X2 663 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms