RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 RELL1Q8IUW5 271 aa9.85□□□□□ -0.83
SF3B1-212ENST00000496458 TOP6BLQ8N6T0 577 aa9.85□□□□□ -0.83
SF3B1-212ENST00000496458 PSMG3-AS1Q96PY0 264 aa9.85□□□□□ -0.83
SF3B1-212ENST00000496458 LEFTY1O75610 366 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 PF4P02776 101 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 ETF1P62495 437 aaKnown RBP9.84□□□□□ -0.83
SF3B1-212ENST00000496458 CAMK2GQ13555 558 aaPredicted RBP9.84□□□□□ -0.83
SF3B1-212ENST00000496458 TSNAXIP1Q2TAA8 658 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 CYP27C1Q4G0S4 372 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 KCT2Q8NC54 265 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 ZNF507Q8TCN5 953 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 RHOVQ96L33 236 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 TMEM74Q96NL1 305 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 RSRP1Q9BUV0 290 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 WNT10AQ9GZT5 417 aa9.84□□□□□ -0.83
SF3B1-212ENST00000496458 RBM47A0AV96 593 aaKnown RBP9.83□□□□□ -0.84
SF3B1-212ENST00000496458 SPINK2P20155 84 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 LMNB2Q03252 620 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 PWP1Q13610 501 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 XP32Q5T750 250 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 BNC2Q6ZN30 1099 aaPredicted RBP9.83□□□□□ -0.84
SF3B1-212ENST00000496458 DUSP23Q9BVJ7 150 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 FBRSQ9HAH7 460 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 KBTBD4Q9NVX7 518 aa9.83□□□□□ -0.84
SF3B1-212ENST00000496458 MINDY4BA8MYZ0 360 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 GFRA2O00451 464 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 GRK4P32298 578 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 RPL6Q02878 288 aaKnown RBP9.82□□□□□ -0.84
SF3B1-212ENST00000496458 FAM160A1Q05DH4 1040 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 MSMPQ1L6U9 139 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 ARMCX6Q7L4S7 300 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 NBPF11Q86T75 865 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 COPRSQ9NQ92 184 aa9.82□□□□□ -0.84
SF3B1-212ENST00000496458 DIEXFQ68CQ4 756 aaKnown RBP9.81□□□□□ -0.84
SF3B1-212ENST00000496458 ERMP1Q7Z2K6 904 aa9.81□□□□□ -0.84
SF3B1-212ENST00000496458 DTX1Q86Y01 620 aa9.81□□□□□ -0.84
SF3B1-212ENST00000496458 TMEM87AQ8NBN3 555 aa9.81□□□□□ -0.84
SF3B1-212ENST00000496458 BPNT1O95861 308 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 F13A1P00488 732 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 NKG7Q16617 165 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 SNAP47Q5SQN1 464 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 CCDC84Q86UT8 332 aaPredicted RBP9.8□□□□□ -0.84
SF3B1-212ENST00000496458 PRDM10Q9NQV6 1147 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 GGT7Q9UJ14 662 aa9.8□□□□□ -0.84
SF3B1-212ENST00000496458 LRIG2O94898 1065 aa9.79□□□□□ -0.84
SF3B1-212ENST00000496458 HS2ST1Q7LGA3 356 aa9.79□□□□□ -0.84
SF3B1-212ENST00000496458 FAM181AQ8N9Y4 354 aa9.79□□□□□ -0.84
SF3B1-212ENST00000496458 ZC3H7BQ9UGR2 993 aaKnown RBP9.79□□□□□ -0.84
SF3B1-212ENST00000496458 CILPO75339 1184 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 PGRP06401 933 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 SLBPQ14493 270 aaKnown RBP eCLIP9.78□□□□□ -0.84
SF3B1-212ENST00000496458 LDLRAD1Q5T700 205 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 HID1Q8IV36 788 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 GOLM1Q8NBJ4 401 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 GATAD2BQ8WXI9 593 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 BACH2Q9BYV9 841 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 TACC3Q9Y6A5 838 aa9.78□□□□□ -0.84
SF3B1-212ENST00000496458 FAM221AA4D161 298 aa9.77□□□□□ -0.85
SF3B1-212ENST00000496458 FOXQ1Q9C009 403 aa9.77□□□□□ -0.85
SF3B1-212ENST00000496458 U3KQE9 123 aa9.77□□□□□ -0.85
SF3B1-212ENST00000496458 ADAMTS4O75173 837 aa9.76□□□□□ -0.85
SF3B1-212ENST00000496458 GARTP22102 1010 aa9.76□□□□□ -0.85
SF3B1-212ENST00000496458 PDE4BQ07343 736 aa9.76□□□□□ -0.85
SF3B1-212ENST00000496458 ARHGAP27Q6ZUM4 889 aa9.76□□□□□ -0.85
SF3B1-212ENST00000496458 CORINQ9Y5Q5 1042 aa9.76□□□□□ -0.85
SF3B1-212ENST00000496458 PRAMEF13Q5VWM6 474 aa9.75□□□□□ -0.85
SF3B1-212ENST00000496458 RGS22Q8NE09 1264 aa9.75□□□□□ -0.85
SF3B1-212ENST00000496458 FBXO27Q8NI29 283 aa9.75□□□□□ -0.85
SF3B1-212ENST00000496458 MIPEPQ99797 713 aa9.75□□□□□ -0.85
SF3B1-212ENST00000496458 BSDC1Q9NW68 430 aaPredicted RBP9.75□□□□□ -0.85
SF3B1-212ENST00000496458 ANGEL1Q9UNK9 670 aaKnown RBP9.75□□□□□ -0.85
SF3B1-212ENST00000496458 SLITRK5O94991 958 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 ZNF76P36508 570 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 EIF4A3P38919 411 aaKnown RBP9.74□□□□□ -0.85
SF3B1-212ENST00000496458 CAP2P40123 477 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 FBXL19Q6PCT2 694 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 PLD6Q8N2A8 252 aaKnown RBP9.74□□□□□ -0.85
SF3B1-212ENST00000496458 XAGE3Q8WTP9 111 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 HEXIM2Q96MH2 286 aaKnown RBP9.74□□□□□ -0.85
SF3B1-212ENST00000496458 DPH2Q9BQC3 489 aaPredicted RBP9.74□□□□□ -0.85
SF3B1-212ENST00000496458 TJP2Q9UDY2 1190 aa9.74□□□□□ -0.85
SF3B1-212ENST00000496458 TLR3O15455 904 aaKnown RBP9.73□□□□□ -0.85
SF3B1-212ENST00000496458 RECKO95980 971 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 WNT11O96014 354 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 CST3P01034 146 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-212ENST00000496458 PLCG1P19174 1290 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 FAM196AQ6ZSG2 479 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 VSIG10LQ86VR7 867 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 MFSD2AQ8NA29 543 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 CCDC39Q9UFE4 941 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 GTF2IRD1Q9UHL9 959 aa9.73□□□□□ -0.85
SF3B1-212ENST00000496458 CCDC9Q9Y3X0 531 aaKnown RBP9.73□□□□□ -0.85
SF3B1-212ENST00000496458 GRIN3BO60391 1043 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 EOMESO95936 686 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 PRNPP04156 253 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 ITIH2P19823 946 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 OXCT1P55809 520 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 MPP2Q14168 576 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 FAM214BQ7L5A3 538 aa9.72□□□□□ -0.85
SF3B1-212ENST00000496458 MRPL41Q8IXM3 137 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms