RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 MTMR6Q9Y217 621 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 SCN9AQ15858 1988 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 COL4A5P29400 1685 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 MYH2Q9UKX2 1941 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 DEKP35659 375 aaKnown RBP16.34■□□□□ 0.21
SMPD4-219ENST00000491128 CDC42EP5Q6NZY7 148 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 TEKT1Q969V4 418 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 GBP4Q96PP9 640 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 CCDC69A6NI79 296 aa16.33■□□□□ 0.21
SMPD4-219ENST00000491128 WTAPQ15007 396 aa16.33■□□□□ 0.21
SMPD4-219ENST00000491128 FAM163AQ96GL9 167 aaPredicted RBP16.33■□□□□ 0.21
SMPD4-219ENST00000491128 SCAF8Q9UPN6 1271 aaKnown RBP16.33■□□□□ 0.21
SMPD4-219ENST00000491128 PSMD14O00487 310 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 ZBTB22O15209 634 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 WDHD1O75717 1129 aaPredicted RBP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 ZSCAN22P10073 491 aaPredicted RBP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 METAP2P50579 478 aaKnown RBP eCLIP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 ENAHQ8N8S7 591 aaPredicted RBP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 FAM184AQ8NB25 1140 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 AIFM3Q96NN9 605 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 SLC12A7Q9Y666 1083 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 CCDC88AQ3V6T2 1871 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 TSPY2A6NKD2 308 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 FDPSP14324 419 aaKnown RBP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 RASSF7Q02833 373 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 SLF2Q8IX21 1173 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 IL27Q8NEV9 243 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 TMEM87BQ96K49 555 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 MKNK2Q9HBH9 465 aa16.33■□□□□ 0.2
SMPD4-219ENST00000491128 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.33■□□□□ 0.2
SMPD4-219ENST00000491128 WDR33Q9C0J8 1336 aaKnown RBP16.32■□□□□ 0.2
SMPD4-219ENST00000491128 ERICH2A1L162 156 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 CPLX1O14810 134 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 ZBTB43O43298 467 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 PRPF40AO75400 957 aaKnown RBP16.32■□□□□ 0.2
SMPD4-219ENST00000491128 EVCP57679 992 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 TFAP4Q01664 338 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 SUPT20HQ8NEM7 779 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 ZSCAN10Q96SZ4 725 aaPredicted RBP16.32■□□□□ 0.2
SMPD4-219ENST00000491128 ADAMTSL1Q8N6G6 1762 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 SHTN1A0MZ66 631 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 FAM196BA6NMK8 535 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 NCLP19338 710 aaKnown RBP16.32■□□□□ 0.2
SMPD4-219ENST00000491128 SBK1Q52WX2 424 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 FBXL16Q8N461 479 aa16.32■□□□□ 0.2
SMPD4-219ENST00000491128 TDRD3Q9H7E2 651 aaKnown RBP16.32■□□□□ 0.2
SMPD4-219ENST00000491128 GOLGA8AA7E2F4 631 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 NFKBIEO00221 500 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 PDE4BQ07343 736 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 PSMD1Q99460 953 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 FAM217BQ9NTX9 383 aaPredicted RBP16.31■□□□□ 0.2
SMPD4-219ENST00000491128 hCG_1642624A0A1W2PR95 340 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 F13A1P00488 732 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 PRKCSHP14314 528 aaPredicted RBP16.31■□□□□ 0.2
SMPD4-219ENST00000491128 SART3Q15020 963 aaKnown RBP16.31■□□□□ 0.2
SMPD4-219ENST00000491128 ILDR2Q71H61 639 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 SMARCC2Q8TAQ2 1214 aa16.31■□□□□ 0.2
SMPD4-219ENST00000491128 SEC23AQ15436 765 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 PRMT6Q96LA8 375 aaPredicted RBP16.3■□□□□ 0.2
SMPD4-219ENST00000491128 CNPY2Q9Y2B0 182 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 TRAK2O60296 914 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
SMPD4-219ENST00000491128 PRELPP51888 382 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 DNM1Q05193 864 aaKnown RBP16.3■□□□□ 0.2
SMPD4-219ENST00000491128 IFIT1BQ5T764 474 aaKnown RBP16.3■□□□□ 0.2
SMPD4-219ENST00000491128 RASGRP2Q7LDG7 609 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 TAOK3Q9H2K8 898 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 IL17RBQ9NRM6 502 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 WDR19Q8NEZ3 1342 aa16.3■□□□□ 0.2
SMPD4-219ENST00000491128 CLRN2A0PK11 232 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 H3BQV1 296 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 SLC3A2P08195 630 aaKnown RBP16.29■□□□□ 0.2
SMPD4-219ENST00000491128 FGRP09769 529 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 PLCG2P16885 1265 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 LIFRP42702 1097 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 CFAP100Q494V2 611 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 IFFO2Q5TF58 517 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 SGMS1Q86VZ5 419 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 IQCA1Q86XH1 822 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 AMOTL1Q8IY63 956 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 SUGT1Q9Y2Z0 365 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 MAST2Q6P0Q8 1798 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 CDK8P49336 464 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 HHIPL2Q6UWX4 724 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 CLEC10AQ8IUN9 316 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 NIM1KQ8IY84 436 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 ZNF654Q8IZM8 581 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 PIBF1Q8WXW3 757 aa16.29■□□□□ 0.2
SMPD4-219ENST00000491128 ORC3Q9UBD5 711 aaPredicted RBP16.29■□□□□ 0.2
SMPD4-219ENST00000491128 CXCL9Q07325 125 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 FIBPO43427 364 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 TSPY3P0CV98 308 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 TSPY8P0CW00 308 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 GUCY1A2P33402 732 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 EIF6P56537 245 aaKnown RBP16.28■□□□□ 0.2
SMPD4-219ENST00000491128 SHROOM1Q2M3G4 852 aaPredicted RBP16.28■□□□□ 0.2
SMPD4-219ENST00000491128 SYNE3Q6ZMZ3 975 aa16.28■□□□□ 0.2
SMPD4-219ENST00000491128 ZSCAN29Q8IWY8 852 aaPredicted RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms