RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS13D-210ENST00000489961 CCDC171Q6TFL3 1326 aa13.02□□□□□ -0.33
VPS13D-210ENST00000489961 CHMLP26374 656 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 ECE1P42892 770 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 MAP3K9P80192 1104 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 MAP3K10Q02779 954 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 SLC4A8Q2Y0W8 1093 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 IFNL3Q8IZI9 196 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS13D-210ENST00000489961 EHD4Q9H223 541 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 ARPP21Q9UBL0 812 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-210ENST00000489961 SERPINB13Q9UIV8 391 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 CSADQ9Y600 493 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 RAD50Q92878 1312 aa13.01□□□□□ -0.33
VPS13D-210ENST00000489961 LAMB1P07942 1786 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 USP17L12C9JPN9 530 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 USP17L21D6R901 530 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 ZNF157P51786 506 aaPredicted RBP13□□□□□ -0.33
VPS13D-210ENST00000489961 SBK1Q52WX2 424 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 CASC1Q6TDU7 716 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 ZNF589Q86UQ0 364 aaPredicted RBP13□□□□□ -0.33
VPS13D-210ENST00000489961 METTL16Q86W50 562 aaKnown RBP13□□□□□ -0.33
VPS13D-210ENST00000489961 SLC10A4Q96EP9 437 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 NAPBQ9H115 298 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 ZNF112Q9UJU3 913 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 TAOK2Q9UL54 1235 aa13□□□□□ -0.33
VPS13D-210ENST00000489961 FAM196BA6NMK8 535 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 CYP2D6P10635 497 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 INPP5BP32019 993 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 PLCD1P51178 756 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 C12orf60Q5U649 245 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 CYP4F22Q6NT55 531 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 CTR9Q6PD62 1173 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-210ENST00000489961 CCDC102AQ96A19 550 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 EPB41L4AQ9HCS5 686 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-210ENST00000489961 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-210ENST00000489961 MYH8P13535 1937 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 DOCK1Q14185 1865 aa12.99□□□□□ -0.33
VPS13D-210ENST00000489961 ATAD5Q96QE3 1844 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 PHF20L1A8MW92 1017 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 MINDY4BA8MYZ0 360 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 CTNND1O60716 968 aaKnown RBP12.98□□□□□ -0.33
VPS13D-210ENST00000489961 CDC45O75419 566 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 SLURP2P0DP57 97 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 HSPD1P10809 573 aaKnown RBP12.98□□□□□ -0.33
VPS13D-210ENST00000489961 GRM1Q13255 1194 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 VGLL4Q14135 290 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 ALX1Q15699 326 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 NOL9Q5SY16 702 aaKnown RBP12.98□□□□□ -0.33
VPS13D-210ENST00000489961 VPS53Q5VIR6 699 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 ZKSCAN4Q969J2 545 aaPredicted RBP12.98□□□□□ -0.33
VPS13D-210ENST00000489961 CLMNQ96JQ2 1002 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 CAPNS2Q96L46 248 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 ELP3Q9H9T3 547 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 SWAP70Q9UH65 585 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 GTF3C3Q9Y5Q9 886 aa12.98□□□□□ -0.33
VPS13D-210ENST00000489961 WDR33Q9C0J8 1336 aaKnown RBP12.97□□□□□ -0.33
VPS13D-210ENST00000489961 CYP2D7A0A087X1C5 515 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 SGSM2O43147 1006 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 SLC10A3P09131 477 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 GABPAQ06546 454 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 RASAL3Q86YV0 1011 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 SCYL3Q8IZE3 742 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 DSCC1Q9BVC3 393 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 DNAJC18Q9H819 358 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 PICK1Q9NRD5 415 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 SNCAIPQ9Y6H5 919 aa12.97□□□□□ -0.33
VPS13D-210ENST00000489961 ZMYM6O95789 1325 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 FOXP2O15409 715 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 SLC3A2P08195 630 aaKnown RBP12.96□□□□□ -0.33
VPS13D-210ENST00000489961 CAP2P40123 477 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 VEGFBP49765 207 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 NOGQ13253 232 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 CERKLQ49MI3 558 aaPredicted RBP12.96□□□□□ -0.33
VPS13D-210ENST00000489961 TATDN1Q6P1N9 297 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 ERO1BQ86YB8 467 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 ZNF287Q9HBT7 754 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 GINM1Q9NU53 330 aa12.96□□□□□ -0.33
VPS13D-210ENST00000489961 ROBO3Q96MS0 1386 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 SPDYE5A6NIY4 337 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 FGAP02671 866 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 ZBTB48P10074 688 aaPredicted RBP12.95□□□□□ -0.34
VPS13D-210ENST00000489961 SHMT1P34896 483 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 EVX2Q03828 476 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 PPARAQ07869 468 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 SPRYD7Q5W111 196 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 KIAA1211Q6ZU35 1233 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 C16orf86Q6ZW13 317 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 DNAJC5GQ8N7S2 189 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 OPTNQ96CV9 577 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 DYNLL2Q96FJ2 89 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 OTUD5Q96G74 571 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 WNK4Q96J92 1243 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 ESYT1Q9BSJ8 1104 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 IL25Q9H293 177 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 CTNNA3Q9UI47 895 aa12.95□□□□□ -0.34
VPS13D-210ENST00000489961 FAM155AB1AL88 458 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-210ENST00000489961 GDF11O95390 407 aa12.94□□□□□ -0.34
VPS13D-210ENST00000489961 ASNSP08243 561 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms