RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 KIF16BQ96L93 1317 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 DOCK1Q14185 1865 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 NBPF7P0C2Y1 421 aaPredicted RBP11.59□□□□□ -0.55
COL17A1-207ENST00000488320 FOSL2P15408 326 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 FGFR2P21802 821 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 CCND3P30281 292 aaPredicted RBP11.59□□□□□ -0.55
COL17A1-207ENST00000488320 ATN1P54259 1190 aaPredicted RBP11.59□□□□□ -0.55
COL17A1-207ENST00000488320 HMGCS2P54868 508 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 MAP3K10Q02779 954 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 EXOSC9Q06265 439 aaKnown RBP11.59□□□□□ -0.55
COL17A1-207ENST00000488320 CCDC27Q2M243 656 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 MAP3K21Q5TCX8 1036 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 SH3BP5LQ7L8J4 393 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 ZNF280CQ8ND82 737 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 LPIN2Q92539 896 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 IL16Q14005 1332 aa11.59□□□□□ -0.55
COL17A1-207ENST00000488320 MYH2Q9UKX2 1941 aa11.58□□□□□ -0.55
COL17A1-207ENST00000488320 ATRNL1Q5VV63 1379 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 XRCC5P13010 732 aaKnown RBP11.58□□□□□ -0.56
COL17A1-207ENST00000488320 IRX3P78415 501 aaPredicted RBP11.58□□□□□ -0.56
COL17A1-207ENST00000488320 NCBP3Q53F19 620 aaKnown RBP11.58□□□□□ -0.56
COL17A1-207ENST00000488320 LHX8Q68G74 356 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 SLF2Q8IX21 1173 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 GPRC5AQ8NFJ5 357 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 SOCS4Q8WXH5 440 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 PLXNB2O15031 1838 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 FANCIQ9NVI1 1328 aa11.58□□□□□ -0.56
COL17A1-207ENST00000488320 TNFRSF10AO00220 468 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 RGS2P41220 211 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 SHHQ15465 462 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 DZIP1Q86YF9 867 aaKnown RBP11.57□□□□□ -0.56
COL17A1-207ENST00000488320 P2RX7Q99572 595 aaKnown RBP11.57□□□□□ -0.56
COL17A1-207ENST00000488320 TBC1D2Q9BYX2 928 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 OSBPL5Q9H0X9 879 aaPredicted RBP11.57□□□□□ -0.56
COL17A1-207ENST00000488320 AS3MTQ9HBK9 375 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 MORF4L1Q9UBU8 362 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 RAPGEFL1Q9UHV5 662 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 DENND2AQ9ULE3 1009 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 SALL2Q9Y467 1007 aaPredicted RBP11.57□□□□□ -0.56
COL17A1-207ENST00000488320 EYSQ5T1H1 3165 aa11.57□□□□□ -0.56
COL17A1-207ENST00000488320 FAM196BA6NMK8 535 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 USP17L5A8MUK1 530 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 TBC1D12O60347 775 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 CNGA1P29973 690 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 MAPK4P31152 587 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 CCL14Q16627 93 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 RABL6Q3YEC7 729 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 TJAP1Q5JTD0 557 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 ZGPATQ8N5A5 531 aaKnown RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 PRKRIP1Q9H875 184 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 DDX4Q9NQI0 724 aaKnown RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 PRDM5Q9NQX1 630 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 TMOD4Q9NZQ9 345 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 ABCF2Q9UG63 623 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 ATP11BQ9Y2G3 1177 aa11.56□□□□□ -0.56
COL17A1-207ENST00000488320 COL2A1P02458 1487 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-207ENST00000488320 EYA2O00167 538 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 PEX10O60683 326 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 BTDP43251 543 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 RTP1P59025 263 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 MFSD14CQ5VZR4 134 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 ANKRD44Q8N8A2 993 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 FAM122AQ96E09 287 aa11.55□□□□□ -0.56
COL17A1-207ENST00000488320 TTYH1Q9H313 450 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-207ENST00000488320 LAMA2P24043 3122 aaKnown RBP11.55□□□□□ -0.56
COL17A1-207ENST00000488320 TMEM265A0A087WTH1 108 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 CAP2P40123 477 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 HERVK_113P62684 666 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 SMAD3P84022 425 aaKnown RBP11.54□□□□□ -0.56
COL17A1-207ENST00000488320 ATP2B3Q16720 1220 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 Q3C1V9 767 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 SH3D19Q5HYK7 790 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 C9orf50Q5SZB4 431 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 PLEKHH3Q7Z736 793 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 EDC3Q96F86 508 aaKnown RBP11.54□□□□□ -0.56
COL17A1-207ENST00000488320 PAGR1Q9BTK6 254 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 UTYO14607 1347 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 SALL1Q9NSC2 1324 aa11.54□□□□□ -0.56
COL17A1-207ENST00000488320 SEMA3EO15041 775 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 GLRX3O76003 335 aaKnown RBP11.53□□□□□ -0.56
COL17A1-207ENST00000488320 ERVK-9P63128 1117 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 ERVK-24P63145 666 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 WDR78Q5VTH9 848 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 SPTY2D1Q68D10 685 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-207ENST00000488320 GPR142Q7Z601 462 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 BADQ92934 168 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 APBA2Q99767 749 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 TXNRD2Q9NNW7 524 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 CEP126Q9P2H0 1117 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 LOC285556D6RIA3 1793 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 GAKO14976 1311 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 ATAD5Q96QE3 1844 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 PRUNE2Q8WUY3 3088 aa11.53□□□□□ -0.56
COL17A1-207ENST00000488320 MSCO60682 206 aa11.52□□□□□ -0.57
COL17A1-207ENST00000488320 MYCNP04198 464 aaPredicted RBP11.52□□□□□ -0.57
COL17A1-207ENST00000488320 HOXA7P31268 230 aaPredicted RBP11.52□□□□□ -0.57
COL17A1-207ENST00000488320 PLA2G5P39877 138 aa11.52□□□□□ -0.57
COL17A1-207ENST00000488320 PHKA1P46020 1223 aa11.52□□□□□ -0.57
COL17A1-207ENST00000488320 BACE1P56817 501 aa11.52□□□□□ -0.57
COL17A1-207ENST00000488320 ATP2B2Q01814 1243 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 917.3 ms